pmx – Python Library and Tools for Computational and Structural Biophysics

pmx

:: DESCRIPTION

pmx (formerly pymacs) has started as a small bunch of classes to read structure files such as pdb or gro and trajectory data in gromacs xtc format. Over the years it has been extended towards a versatile (bio-) molecular structure manipulation package with some additional functionalities, e.g. gromacs file parsers and scripts for setup and analysis of free energy calculations.

::DEVELOPER

Daniel Seeliger

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

pmx

:: MORE INFORMATION

Citation

Biophys J. 2010 May 19;98(10):2309-16. doi: 10.1016/j.bpj.2010.01.051.
Protein thermostability calculations using alchemical free energy simulations.
Seeliger D1, de Groot BL.

PMx 1.2 – Software for Pedigree Analysis and Management

PMx 1.2

:: DESCRIPTION

PMx is a package of demographic and genetic analysis tools to assist with the management of breeding programs for wildlife species.

::DEVELOPER

Robert Lacy and JoAnna Kelly at Chicago Zoological Society

:: SCREENSHOTS

PMx

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 PMx

:: MORE INFORMATION

Citation

Lacy, R.C., J.D. Ballou, & J.P. Pollak. 2012.
PMx: Software package for demographic and genetic analysis and management of pedigreed populations.
Methods in Ecology & Evolution 3:433-437.