adephylo 1.1-6 – Exploratory Analyses for the Phylogenetic Comparative Method

adephylo 1.1-6

:: DESCRIPTION

adephylo is a package for the R software dedicated to the analysis of comparative evolutionary data. Phylogenetic comparative methods initially aimed at accounting for or removing the effects of phylogenetic signal in the analysis of biological traits.

::DEVELOPER

adephylo team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 adephylo

:: MORE INFORMATION

Citation

adephylo: new tools for investigating the phylogenetic signal in biological traits.
Jombart T, Balloux F, Dray S.
Bioinformatics. 2010 Aug 1;26(15):1907-9. doi: 10.1093/bioinformatics/btq292.

COMPARE 4.6b – Phylogenetic Comparative Methods

COMPARE 4.6b

:: DESCRIPTION

COMPARE analyzes interspecific data in an evolutionary context. It applies several Phylogenetic Comparative Methods (e.g., independent contrasts, spatial autocorrelation, phylogenetic GLS, phylogenetic mixed model), and can conduct phylogenetic randomization tests (i.e., to generate random phylogenies, branch lengths, or interspecific data on a phylogeny).

::DEVELOPER

Martins Lab

:: SCREENSHOTS

COMPARE

:: REQUIREMENTS

  • Linux/ WIndows/MacOsX
  • Java

:: DOWNLOAD

 COMPARE

:: MORE INFORMATION

Citation

Syst Biol. 2002 Dec;51(6):873-80.
Phylogeny shape and the phylogenetic comparative method.
Martins EP, Housworth EA.