PhosSNP 1.0 – Influence of Protein Phosphorylation by nsSNP

PhosSNP 1.0

:: DESCRIPTION

PhosSNP is a database of Phosphorylation-related SNP. we defined a phosphorylation-related SNP (phosSNP) as a non-synonymous SNP (nsSNP) that affects the protein phosphorylation status.

::DEVELOPER

The CUCKOO Workgroup

:: SCREENSHOTS

:: REQUIREMENTS

  • WIndows / Linux / MacOsX
  • Java

:: DOWNLOAD

 PhosSNP

:: MORE INFORMATION

Citation

PhosSNP for Systematic Analysis of Genetic Polymorphisms That Influence Protein Phosphorylation
Jian Ren, Chunhui Jiang, Xinjiao Gao, Zexian Liu, Zineng Yuan, Changjiang Jin, Longping Wen, Zhaolei Zhang, Yu Xue and Xuebiao Yao.
Mol Cell Proteomics. 2010;9(4):623-634

PHOSFER – PHOsphorylation Site FindER

PHOSFER

:: DESCRIPTION

PHOSFER uses a novel machine-learning approach in order to predict phosphorylation sites in soybean proteins, and will be expanded to predict for other plants in the future.

::DEVELOPER

Bioinformatics Research Group, University of Saskatchewan

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

B. Trost and A. Kusalik.
Computational phosphorylation site prediction in plants using random forests and organism-specific instance weights.
Bioinformatics 29(6):686-694, 2013.

PSEA – Kinase-specific Prediction and analysis of Human Phosphorylation Substrates

PSEA

:: DESCRIPTION

PSEA (Phosphorylation Set Enrichment Analysis) is a software to detect new sites phosphorylated by a specific kinase, kinase family and kinase group.

::DEVELOPER

the Qiu Lab. NanChang University.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser
:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

Sci Rep. 2014 Mar 31;4:4524. doi: 10.1038/srep04524.
PSEA: Kinase-specific prediction and analysis of human phosphorylation substrates.
Suo SB, Qiu JD, Shi SP, Chen X, Liang RP.