FamAgg 0.99.9 – Pedigree Analysis and Familial Aggregation

FamAgg 0.99.9

:: DESCRIPTION

FamAgg is an open source R package that contains both established and novel methods to investigate familial aggregation of traits in large pedigrees.

::DEVELOPER

Johannes Rainer

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • R / BioConductor

:: DOWNLOAD

 FamAgg

:: MORE INFORMATION

Citation

FamAgg: an R Package to Evaluate Familial Aggregation of Traits in Large Pedigrees.
Rainer J, Taliun D, D’Elia Y, Pattaro C, Domingues FS, Weichenberger CX.
Bioinformatics. 2016 Jan 22. pii: btw019.

PMx 1.2 – Software for Pedigree Analysis and Management

PMx 1.2

:: DESCRIPTION

PMx is a package of demographic and genetic analysis tools to assist with the management of breeding programs for wildlife species.

::DEVELOPER

Robert Lacy and JoAnna Kelly at Chicago Zoological Society

:: SCREENSHOTS

PMx

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 PMx

:: MORE INFORMATION

Citation

Lacy, R.C., J.D. Ballou, & J.P. Pollak. 2012.
PMx: Software package for demographic and genetic analysis and management of pedigreed populations.
Methods in Ecology & Evolution 3:433-437.

PEDIG – Pedigree Analysis suited for Large Population

PEDIG

:: DESCRIPTION

PEDIG is a fortran software suited to the analysis of very large populations (up to several tens of million individuals).

::DEVELOPER

D. Boichard (contact author), INRA

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • Fortran

:: DOWNLOAD

 PEDIG

:: MORE INFORMATION

PAP 7.1 /jPAP 1.7.1 – Pedigree Analysis Package

PAP 7.1 /jPAP 1.7.1

:: DESCRIPTION

PAP (Pedigree Analysis Package) is a package of programs for computing likelihoods or simulating phenotypes on pedigree members using genetic models. Version 7.1(1) is the latest release in a long line of console-driven implementations. The package may be used for segregation analysis, variance components analysis, linkage analysis, measured genotype analysis, transmission disequilibrium testing, or genetic model fitting. It is distributed as the FORTRAN source. A large suite of examples, keyed to the manual, is included.

jPAP (Java Pedigree Analysis Package) is a document-driven GUI edition of PAP, intended to replace and extend the older console programs.

::DEVELOPER

Sandra J. Hasstedt

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux/windows/MacOsX
  • Java

:: DOWNLOAD

 PAP /jPAP

:: MORE INFORMATION

Citation

Hum Hered. 2011;72(4):258-63. Epub 2011 Dec 23.
Detecting pleiotropy and epistasis using variance components linkage analysis in jPAP.
Hasstedt SJ, Thomas A.