Pedigree
- Haplore 2.42 – Haplotype Reconstruction in pedigrees
- Peditree 2005 – Plant Pedigree Tree Drawing & Analysis
- PedigreeSim – Simulation of Genotypes in Pedigrees of Diploid and Tetraploid Species
- Heu-MCHC 1.0.2 – Heuristic Algorithm for the Haplotype Inference problem on Pedigree data with recombinations and mutations
- reHCstar 2.0.0 – Algorithm for Haplotype Inference problem on Pedigree data with Recombinations, Errors and Mutations
- LINKAGE 5.10 – Pedigree Linkage Analysis
- PedPhase 3.0 – Haplotype Inference from Genotypes on Pedigree data
- SPIP 1.0 – Simulate Pedigrees and Genetic data in Age-structured Population
- PRT 2.03 – Pedigree Reconstruction Tools
- PedVizApi 0.15 – Visual Analysis of large and complex Pedigrees
- PedHunter 2.0 – Creation and Verification of Pedigrees within large Genealogies
- PAF 5.2.18.0 – Pedigree Filing software
- MdrPDT 2.0.1.21 – Multifactor Dimensionality Reduction and genotype Pedigree Disequilibrium Test
- MQscore 1.0 / MQscore_SNP 1.1 – Parametric Linkage analysis of Quantitative Traits in large pedigrees
- PedPeel 0.0.2 – Prepare Pedigree data for Calculation of Elston-Stewarts’ Likelihood function
- PedigreeQuery 20080410 – Drawing Pedigrees step-by-step
- PEDIGREE-EXPLORER 2.0 – Explore Pedigree
- LDWP – Linked Region Detection without Pedigree
- PEDSYS 2.0 – Database System for Management of Genetic, Pedigree and Demographic data
- SQTL – Semiparametric QTL Mapping in General Pedigrees
- ExomePicks 20100412 – Suggest Individuals to be Sequenced in a Large Pedigree
- EPDT 1.0 – Extended Pedigree Disequilibrium Test
- Endog 4.8 – Analyse Pedigree Information
- Prest-plus 4.09 – Detection of Misspecified Relationships in Pedigrees
- ROADTRIPS 1.2 – Case-Control Association Testing with Partially or Completely Unknown Population and Pedigree Structure
- Pedcheck 1.00 – Detecting Marker Typing Incompatibilities in Pedigree Data
- HaploPainter 1.043 – Pedigree and Haploytype Drawing Tool
- ECLIPSE 1.1 – Error Correcting Likelihoods In Pedigree Structure Estimation
- FRANz 2.0 – Reconstruction of Pedigrees
- MDR-Phenomics 1.0 – Detect Gene-gene Interaction in the Pedigree Data
- PDT 5.1 – Test for Linkage and Association in General Pedigrees
- SIMLA 3.3 – SIMulation of Pedigree Data for Linkage and Association Studies
- SIBSIM 2.1.3 – Phenotype Simulation in Extended Pedigrees
- PBAT 3.6.7 – Pedigree Based Association Test
- PEDIGREE VIEWER 6.5b – Draw & Manipulate Pedigree Diagrams
- PEDRAW 2.5 – Pedigree Drawing Program
- PED 6.0.2 – Pedigree Drawing Software
- PEDSTATS 0.6.12 – Statistics & Quality Assessments for Gene-mapping Data
- LAMP 0.0.9 – Linkage & Association Modeling for Pedigrees
- MERLIN 1.1.2 – Pedigree Analysis
- GRR 1.2.1.41 – Detect Pedigree Errors
- Kinship 1.3.1 – Maximum Likelihood Tests of Pedigree Relationships
- PhyloPed 0.4 – Haplotype Inference in Pedigrees


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