vcflib 1.0.0 – C++ Library for Parsing and Manipulating VCF files

vcflib 1.0.0

:: DESCRIPTION

vcflib is a simple C++ library for parsing and manipulating Variant Call Format (VCF) files, + many command-line utilities

::DEVELOPER

Erik Garrison erik.garrison@bc.edu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOSX
  • C++ Compiler

:: DOWNLOAD

  vcflib

:: MORE INFORMATION

illuminaio 0.10.0 – Parsing Illumina Microarray Output Files

illuminaio 0.10.0

:: DESCRIPTION

illuminaio is a suit of tools for parsing Illuminas microarray output files, including IDAT.

::DEVELOPER

Hansen Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • R
  • BioCOnductor

:: DOWNLOAD

 illuminaio

:: MORE INFORMATION

Citation

F1000Res. 2013 Dec 4;2:264. doi: 10.12688/f1000research.2-264.v1. eCollection 2013.
illuminaio: An open source IDAT parsing tool for Illumina microarrays.
Smith ML, Baggerly KA, Bengtsson H, Ritchie ME, Hansen KD

GBKParser 201103 – Parsing basic Gene Information from a Genbank file

GBKParser 201103

:: DESCRIPTION

GBKParser, a simple tool for parsing basic gene information from a genbank file.

::DEVELOPER

GEMSiRV team

:: SCREENSHOTS

GBKParser

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Java

:: DOWNLOAD

 GBKParser

:: MORE INFORMATION

KEGGParser 20140324 – Parsing and Editing KEGG Pathway Maps in Matlab

KEGGParser 20140324

:: DESCRIPTION

KEGGParser is a MATLAB based tool for KEGG pathway parsing, semiautomatic fixing, editing, visualization and analysis in MATLAB environment.

::DEVELOPER

 Arsen Arakelyan

:: SCREENSHOTS

KEGGParser

::REQUIREMENTS

  • Linux/ Windows/MacOsX
  • MatLab

:: DOWNLOAD

 KEGGParser

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Feb 15;29(4):518-9. doi: 10.1093/bioinformatics/bts730. Epub 2013 Jan 3.
KEGGParser: parsing and editing KEGG pathway maps in Matlab.
Arakelyan A, Nersisyan L.

BioParser 1.2.3 – Parsing Sequence Similarity Analysis Reports

BioParser 1.2.3

:: DESCRIPTION

BioParser is a Perl program for parsing sequence similarity analysis reports.

::DEVELOPER

Department of Biochemistry and Molecular Biology, Oswaldo Cruz Institute, Brazil.

:: SCREENSHOTS

BioParser

:: REQUIREMENTS

  • Linux / Windows
  • Perl
  • BioPerl
  • MySQL

:: DOWNLOAD

 BioParser

:: MORE INFORMATION

Citation

Appl Bioinformatics. 2006;5(1):49-53.
BioParser: a tool for processing of sequence similarity analysis reports.
Catanho M, Mascarenhas D, Degrave W, de Miranda AB.

HaploParser 0.1 – Haplotype Inference using Combinatoric Parsing

HaploParser 0.1

:: DESCRIPTION

HaploParser solves so-called genotype phasing (or haplotype inference) problem. The program (and its source) is mainly for educational and for research purposes.

::DEVELOPER

Pasi Rastas

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux /MacOsX
  • Java

:: DOWNLOAD

 HaploParser

:: MORE INFORMATION

Citation

Pasi Rastas, Esko Ukkonen
Haplotype Inference via Hierarchical Genotype Parsing
7th Workshop on Algorithms in Bioinformatics – WABI 2007