Parallel
- RPMCMC 0.2 – Repulsive Parallel MCMC Algorithm
- PBOOST – Parallel Permutation Tests in Genome-wide Association Studies
- RAxML 8.1.1 / RAxML Workbench 1.0 – Sequential and Parallel Maximum Likelihood based inference of large phylogenetic trees
- PLAST 1.0 – Parallel Local Alignment Search Tool for Database Comparison
- ABySS 1.5.2 – de novo, parallel, paired-end Sequence Assembler
- BitPAl – Bit-parallel Alignment
- parastructure 0.9 – Run the Population Genetics software STRUCTURE in Parallel on a Cluster
- HECTOR 1.0 – A Parallel Homopolymer Spectrum based 454 Error Corrector
- Ray 2.3.1 – Parallel Genome Assemblies for Parallel DNA sequencing
- PaRFR – Parallel Random Forest Regression for Hadoop
- CUDASW++ 3.1 – Parallel Smith Waterman Protein database search algorithm
- Musket 1.1 – Parallel and Scalable Multistage K-mer Spectrum based Error Corrector for Illumina Sequence data
- CUDA-EC 1.02 – Fast Parallel Error Correction tool for Short Reads
- ALEXA-Seq 1.17 – Alternative Expression Analysis by massively parallel RNA Sequencing
- shellfish – Parallel PCA and data processing for Genome-wide SNP data
- JESAM 0.8.1 – Parallel Processing DNA Sequence Comparison and Clustering
- PaCE – Parallel software for Clustering DNA sequences
- pClust 1.0 – Parallel Identification of Dense Protein Clusters
- ParaAT 1.0 – Parallel Alignment & back-Translation
- Pasqual 1.0 – Parallel de Novo Genome Sequence Assembler
- Parallel T-Coffee 1.914 – Parallel Multiple Sequence Aligner based on TCoffee
- MSAProbs 0.9.7 – Parallel and Accurate Multiple Sequence Alignment
- PTS 1.0.2 – Parallel Tagged Sequencing
- ParaSAM – Parallel Version of the SAM Algorithm