Parallel
- Ray 2.2.0 – Parallel Genome Assemblies for Parallel DNA sequencing
- ABySS 1.3.5 – de novo, parallel, paired-end Sequence Assembler
- CUDASW++ 3.0.14 – Parallel Smith Waterman Protein database search algorithm
- RAxML 7.4.2 / RAxML Workbench 1.0 – Sequential and Parallel Maximum Likelihood based inference of large phylogenetic trees
- Musket 1.0.6 – Parallel and Scalable Multistage K-mer Spectrum based Error Corrector for Illumina Sequence data
- shellfish – Parallel PCA and data processing for Genome-wide SNP data
- JESAM 0.8.1 – Parallel Processing DNA Sequence Comparison and Clustering
- PaCE – Parallel software for Clustering DNA sequences
- pClust 1.0 – Parallel Identification of Dense Protein Clusters
- ParaAT 1.0 – Parallel Alignment & back-Translation
- Pasqual 1.0 – Parallel de Novo Genome Sequence Assembler
- Parallel T-Coffee 1.914 – Parallel Multiple Sequence Aligner based on TCoffee
- MSAProbs 0.9.7 – Parallel and Accurate Multiple Sequence Alignment
- PTS 1.0.2 – Parallel Tagged Sequencing
- dBlast 1.1.1 – Wrapper to Run NCBI BLAST in Parallel/Distributed
- ParaSAM – Parallel Version of the SAM Algorithm
- PLAST 1.0 – Parallel Local Alignment Search Tool for Database Comparison
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