3DNA 2.3 – Vsualization of Three-Dimensional Nucleic Acid Structures

3DNA 2.3

:: DESCRIPTION

3DNA is a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures.

::DEVELOPER

Dr. Xiang-Jun Lu in the laboratory of Professor Wilma K. Olson at the Department of Chemistry and Chemical Biology, Rutgers-the State University of New Jersey

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Window with Cygwin / Linux / Mac OsX

:: DOWNLOAD

3DNA

:: MORE INFORMATION

Citation

Xiang‐Jun Lu and Wilma K. Olson
3DNA: a software package for the analysis, rebuilding and visualization of three‐dimensional nucleic acid structures
Nucl. Acids Res. (2003) 31 (17): 5108-5121.

Curves+ 2.6 – Analyzing the Conformation of Nucleic Acid Structures

Curves+ 2.6

:: DESCRIPTION

Curves+ is a revised version of the Curves software for analyzing the conformation of nucleic acid structures.

::DEVELOPER

Richard Lavery (r.lavery@ibcp.fr)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Fortran

:: DOWNLOAD

 Curves+

:: MORE INFORMATION

Citation

Nucleic Acids Res. 2011 Jul;39(Web Server issue):W68-73. doi: 10.1093/nar/gkr316. Epub 2011 May 10.
CURVES+ web server for analyzing and visualizing the helical, backbone and groove parameters of nucleic acid structures.
Blanchet C1, Pasi M, Zakrzewska K, Lavery R.

NUCGEN – Generation and Analysis of Sequence Dependent Nucleic Acid Structures

NUCGEN

:: DESCRIPTION

NUCGEN reads wedge (or local doublet) and basepair parameters calculates local helical parameters from local doublet parameters, then applies the base-pair and helical parameters to succesive  basepairs after transforming the already generated ones to bring the topmost one in the (x-y) plane.

::DEVELOPER

Prof. Manju Bansal Lab, MBU, IISc, Bangalore, India.

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

 NUCGEN

:: MORE INFORMATION

Citation

NUPARM and NUCGEN: software for analysis and generation of sequence dependent nucleic acid structures.
Bansal M, Bhattacharyya D, Ravi B.
Comput Appl Biosci. 1995 Jun;11(3):281-7.