MtreeHMM 0.1.01 – Mutagenetic Tree Hidden Markov models

MtreeHMM 0.1.01

:: DESCRIPTION

MtreeHMM is a Perl program that implements the Expectation Maximization algorithm described in (Beerenwinkel & Drton, 2007) for estimating the parameters of the mutagenetic tree hidden Markov model from longitudinal clonal sequence data.

::DEVELOPER

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOSX
  • Perl

:: DOWNLOAD

 MtreeHMM

:: MORE INFORMATION

Citation

Beerenwinkel N, Drton M (2007).
A mutagenetic tree hidden Markov model for longitudinal clonal HIV sequence data.
Biostatistics 8(1):53-71.