NGL Viewer 0.6 – Web Application for Molecular Visualization

NGL Viewer 0.6

:: DESCRIPTION

The NGL Viewer is a web application for the visualization of macromolecular structures. Large molecular complexes from common structural file-formats (e.g. PDB, mmCIF) are interactively displayed by fully adopting capabilities of modern web browsers, including WebGL. A graphical user interface allows easy access to a variety of molecular representations (e.g. ‘cartoon, spacefill, licorice’). Moreover, the viewer can be embedded in other web sites to provide custom visualizations.

::DEVELOPER

Alexander Rose <alexander.rose@weirdbyte.de> @ Institute of Medical Physics and Biophysics

:: SCREENSHOTS

NGLViewer

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

NGL Viewer

:: MORE INFORMATION

Citation
Nucleic Acids Res. 2015 Apr 29. pii: gkv402.
NGL Viewer: a web application for molecular visualization.
Rose AS, Hildebrand PW

3Dmol.js 1.0.4 – Molecular Visualization with WebGL

3Dmol.js 1.0.4

:: DESCRIPTION

3Dmol.js is an object-oriented, webGL based JavaScript library for online molecular visualization – No Java required! With 3Dmol.js, you can add beautifully rendered molecular visualizations to your web applications.

::DEVELOPER

David Ryan Koes, PhD

:: SCREENSHOTS

3dmol

:: REQUIREMENTS

  • Web Browser
  • JavaScript

:: DOWNLOAD

  3Dmol.js

:: MORE INFORMATION

Citation

3Dmol.js: Molecular Visualization with WebGL.
Rego N, Koes D.
Bioinformatics. 2014 Dec 12. pii: btu829.

DS Visualizer 4.5 & ActiveX Control 4.5 – Molecular Visualization

DS Visualizer 4.5 & ActiveX Control 4.5

:: DESCRIPTION

Discovery Studio® Visualizer allows you to view and edit molecular structures, sequences and sequence alignments and Perl scripts created with the Discovery Studio and other applications. It provides a convenient interface for everyday data analysis tasks and enables you to share and view data with other collaborators.

The Discovery Studio Visualizer is a free viewer that can be used to open data generated by other software in the Discovery Studio product line. It is designed to offer an interactive environment for viewing and editing molecular structures, sequences, X-ray reflection data, scripts, and other data. It also provides a rich set of viewers for displaying plots and other graphical representations of data. The application runs on Windows and Linux and is a fully integrated desktop environment that provides access to standard operating system features such as the file system, clipboard, and printing services.

The Visualizer supports a wide variety of industry-standard formats. In addition, it reads and writes the native formats used by the Discovery Studio product suite, making it easy to view the results of colleagues who work with Accelrys products. It also integrates with your system’s clipboard, making it possible to exchange data with other applications.

A set of integrated analysis functions are provided that allows you to compute basic properties of molecules and sequences. The Visualizer also provides access to the Discovery Script Perl Application Programming Interface (API), which enables you to create new analysis tools and to automate common tasks.

The Discovery Studio® Visualizer ActiveX Control is a free product that provides a viewer that can be embedded in web browsers, PowerPoint presentations, and other Microsoft documents. You can use the Discovery Studio Visualizer ActiveX Control to offer your content via Microsoft Internet Explorer, Microsoft PowerPoint slides, or within your own custom application.

::DEVELOPER

Accelrys

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux
  • Microsoft PowerPoint / IE

:: DOWNLOAD

DS Visualizer  & ActiveX Control

:: MORE INFORMATION

PocketMol 1.0 – Molecular Visualization Program for the Pocket PC

PocketMol 1.0

:: DESCRIPTION

PocketMol allows you to view and manipulate Protein Data Bank (pdb) files on a PocketPC.  Manipulation includes moving, scaling, and rotating a protein using the stylus. Individual atoms can be selected to view their properties. Several view options are available, including a standard backbone view, only alpha carbons, and a wireframe and solid ribbon trace.

::DEVELOPER

Jason Gilder (gilder.2@wright.edu)

:: SCREENSHOTS

PocketMol

:: REQUIREMENTS

  • PocketPC

:: DOWNLOAD

 PocketMol

:: MORE INFORMATION

iMol 0.40 – Molecular Visualization Application for Mac OS X

iMol 0.40

:: DESCRIPTION

iMol is a free molecular visualization application for Mac OS X operating system. The program is an indispensable tool for chemists and molecular biologists. iMol supports several file formats. It can easily handle small and large molecules, loads multiple molecules, can move and rotate them independently, or displays a molecular dynamics trajectory.

::DEVELOPER

Piotr Rotkiewicz

:: SCREENSHOTS

:: REQUIREMENTS

  • Mac OSX

:: DOWNLOAD

iMol

:: MORE INFORMATION

If you are using iMol in your research, please cite:
Piotr Rotkiewicz, “iMol Molecular Visualization Program,” (2007) http://www.pirx.com/iMol

JyMOL 1.0 – Java-based Molecular Visualization

JyMOL 1.0

:: DESCRIPTION

JyMOL, a Java-based development component, enables developers to easily create molecular visualization programs, browser applets, and JavaWS applications, replacing the visualization expert otherwise needed to build a specialized visualization component. The JyMOL API was designed to obviate the learning curve for users familiar with the PyMOL API.

::DEVELOPER

Schrödinger, LLC

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Java

:: DOWNLOAD

JyMOL

:: MORE INFORMATION

Citation

The JyMOL Molecular Graphics System, Schrödinger, LLC.