OMERO 5.2.2 – Management & Analysis of Biological Microscope Images

OMERO 5.2.2

:: DESCRIPTION

OMERO is client-server Java software for visualisation, management and analysis of biological microscope images. The software consists of the OMERO server which can be accessed by a number of different clients. The OMERO clients allow the scientist to remotely manage, view, annotate and measure multi-dimensional images from anywhere. OMERO can also be extended to support data analysis.

::DEVELOPER

OME Development Teams

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • java

:: DOWNLOAD

OMERO server/Clients/ImageJ plugin

:: MORE INFORMATION

Citation

Metadata management for high content screening in OMERO.
Li S, Besson S, Blackburn C, Carroll M, Ferguson RK, Flynn H, Gillen K, Leigh R, Lindner D, Linkert M, Moore WJ, Ramalingam B, Rozbicki E, Rustici G, Tarkowska A, Walczysko P, Williams E, Allan C, Burel JM, Moore J, Swedlow JR.
Methods. 2015 Oct 22. pii: S1046-2023(15)30125-0. doi: 10.1016/j.ymeth.2015.10.006.

Nat Methods. 2012 Feb 28;9(3):245-53. doi: 10.1038/nmeth.1896.
OMERO: flexible, model-driven data management for experimental biology.
Allan C,et al.

Image SXM 1.97 – Scanning Microscope Images Analysis

Image SXM 1.97

:: DESCRIPTION

Image SXM is a version of the public domain image analysis software NIH Image that has been extended to handle the loading, display and analysis of scanning microscope images. Image SXM supports SAM, SCM, SEM, SFM, SLM, SNOM, SPM and STM images.

::DEVELOPER

Dr. Steve Barrett

:: SCREENSHOTS

:: REQUIREMENTS

  • Mac

:: DOWNLOAD

Image SXM

:: MORE INFORMATION

Citation:

[ref] Image SXM, S D Barrett (2008) http://www.ImageSXM.org.uk

OMERO.searcher 1.3 – Content-based Image search for Microscope Images

OMERO.searcher 1.3

:: DESCRIPTION

OMERO.searcher is an open source addon to OMERO to enable content-based image searching.

::DEVELOPER

Murphy Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Python

:: DOWNLOAD

  OMERO.searcher

:: MORE INFORMATION

Citation

Nat Methods. 2012 Jun 28;9(7):633-4. doi: 10.1038/nmeth.2086.
OMERO.searcher: content-based image search for microscope images.
Cho BH, Cao-Berg I, Bakal JA, Murphy RF.

top2maya – View 2D Atomic Force microscope Images as 3D Objects

top2maya

:: DESCRIPTION

top2maya is a script written in MEL (Maya Embedded Language) which runs in Alias|Wavefront’s Maya 2.5 and higher. It is a 3D visualization tool which analyzes images in 256 shades of gray and then displaces the individual pixels based on their color. It is a very effective tool for viewing 2D atomic force microscope images as 3D objects. As well as giving you a 3D image, it can also allow you to visualize multiple variables by doing the 3D displacement with one variable, for example the topography, then doing the shading on the new 3D object with another variable, for example surface friction.

::DEVELOPER

the Beckman Institute Imaging Technology Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

geo.mel;  top2maya

:: MORE INFORMATION

N/A