EMPeror 1.0.0-beta.20 – Analysis of High Throughput Microbial Ecology datasets

EMPeror 1.0.0-beta.20

:: DESCRIPTION

Emperor is an interactive next generation tool for the analysis, visualization and understanding of high throughput microbial ecology datasets.

::DEVELOPER

Knight Lab

:: SCREENSHOTS

 EMPeror

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • Python
  • Numpy
  • qcli

:: DOWNLOAD

 EMPeror

 :: MORE INFORMATION

Citation

EMPeror: a tool for visualizing high-throughput microbial community data.
Vázquez-Baeza Y, Pirrung M, Gonzalez A, Knight R.
Gigascience. 2013 Nov 26;2(1):16. doi: 10.1186/2047-217X-2-16.

CMEIAS 1.28 – Microbial Ecology Image Analysis Software

CMEIAS 1.28

:: DESCRIPTION

CMEIAS (Center for Microbial Ecology Image Analysis Software) is a free image analysis software tools designed to strengthen microscopy-based approaches for understanding microbial ecology. CMEIAS provide a powerful quantitative approach to analyze ecophysiological and spatial features that complement molecular microbial ecology approaches to analyze complex microbial communities in situ without cultivation.

::DEVELOPER

CMEIAS Team

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

CMEIAS

:: MORE INFORMATION

Citation

Liu J., F.B. Dazzo, O. Glagoleva, B. Yu, A.K. Jain. 2001.
CMEIAS: A computer-aided system for the image analysis of bacterial morphotypes in microbial communities.
Microbial Ecology 41(3): 173-194 and 42: 215.