Microarray
- BASE 3.2.2 – Microarray Data Management & Analysis
- RobiNA 1.2.4 – Open Source Microarray and RNA-Seq Processing
- HCE 3.5 – Interactive Power Analysis for Microarray Hypothesis Testing and Generation
- Array-A-Lizer 1.03 – DNA Microarray Quality Analyzer
- MAIA 2.75 – Microarray Image Analysis
- InCroMAP 1.4.0 – Integrated Analysis of Cross-platform MicroArray and Pathway data
- POE 0.2-7 – analysis of Gene Expression Microarrays using Three-component Mixtures
- SNOMAD – Standardization & Normalization of Microarray Data
- chipchipnorm 1.0.1 – Normalize 2-color Microarray Data
- BRB-ArrayTools 4.3.0 Beta2 – Visualization & Analysis of DNA Microarray Gene Expression Data
- TriCluster / MicroCluster – Microarray Gene Expression Clustering
- dChip 2011.12 – Analysis & Visualization of Gene Expression & SNP Microarrays
- AnovArray 1.1 – SAS macros for Analysing Microarray- and Macroarray-type Expressional data
- OOMPA 2.15.1 – Object-Oriented Microarray and Proteomic Analysis
- IBMT – Testing for Differentially Expressed Genes in Microarrays
- MBR 20070206 – Microarray Blob Remover
- Array Designer 4.30 – Oligo & cDNA Microarray Design Software
- ChipInspector 2.1 – Microarray Data Analysis
- VAMPIRE – Interpret Microarray Gene Expression Data
- M@IA 1.2 – Microarray Integrated Applications
- ITACA 1.0 – Integrative Tool for microArray and CESH Analysis
- SAM 4.0 – Significance Analysis of Microarrays
- CARMAweb 1.3 – R- and Bioconductor-based web service for Microarray Data Analysis
- E-Predict 1.0 – Microarray-based Species Identification
- J-Express 2012 – Analysis and Visualization of Microarray Data
- L2L 1.2 – Microarray Analysis Tool
- RZ-smooth 3.5 – Resample, Smooth and Normalize Microarray time-series data
- GSIM – Microarray Gene Expression Simulator
- ArrayOme 1.0 – Estimate the sizes of Microarray-visualised Bacterial Genomes
- FindProbe v2 – Design Probes for Microarrays
- Mayday 2.13 – Microarray Data Analysis
- QTModel 0.70Beta – Mixed Linear Model Analysis, Microarray Data Analysis and Diallele Cross Analysis
- HIDRA 1.1.1 – Multi-dataset Microarray Visualization System
- CHROMOWAVE 1.0 – Microarrays Data Analysis
- MAF – LIMS with Extended support for Nylon based Microarrays
- ExpressYourself – Microarray Data Processing Platform
- MIMAS 3.0 – Microarray Information Management and Annotation System
- EPIG – Extract Microarray Gene Expression Patterns and Identifying co-expressed Genes
- SVN – Remove Systematic Variation in Microarray Gene Expression data
- SignalViewer – Image Analysis of cDNA Microarrays
- QUBIC 1.0 – Biclustering Tool for Microarray Data
- Primegens 2.0.5 – Primer Design for Microarray
- KegArray 1.2.3 – Microarray Data Analysis & Cluster
- DWD – Perform Systematic Bias Adjustment in microarray data.
- MPDA 20081110 – Microarray Pooled DNA Analyzer
- PerfectMatch 2.3.3 – Quantify Affymetric Microarrays
- Gene Ontology Browser 0.92 – Map Microarray Gene Expression data onto the GeneOntology
- ArrayCluster 1.0 – Mixed Factors Analysis of Microarray Gene Expression Data
- M-BISON 1.0 – Microarray-Based Integration of data SOurces using Networks
- MPP 2.0 – Microarray-to-Phylogeny Pipeline
- MAmodel 20060511 – Microarray Simulator
- GenePool 0.9.1 – Analyze SNP Microarray Probe Intensity data & Rank SNPs
- Deciphia – Evaluate Individuals’ Membership in DNA Mixture using Microarrays
- AIM 0.82 – Automatic Image Processing for Microarrays
- Ginkgo 1.01 – CGH & Expression Microarray Data Analysis & Normalization
- PermutMatrix 1.9.3 – Microarray Data Cluster & Seriation Analysis
- Array Tools 3.3 – Dictyostelium Discoideum Microarray Data Analysis
- MAGIC Tool 2.1 – MicroArray Genome Imaging & Clustering Tool
- Venn Mapper 1.01 – Compare Heterologous Microarray Data Sets
- ArrayMiner 5.3 – Microarray Gene Expression Data Analysis
- OligoArray 2.1.3 – Genome-scale Oligonucleotide Design for Microarrays
- MIDAS 2.22 – Microarray Data Analysis System
- Spotfinder v3.2.1 – Microarray Images Analysis & Gene Expression Quantification
- MADAM 4.1 – MicroArray DAta Manager
- AMIADA 2.0.7 – Analysis of Microarray Data
- MAExplorer 0.96.34.01 – MicroArray Explorer Tool
- ScanAlyze 2.51 – Microarray Image Analysis Software
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