Metabolic Network
- MetNetMaker 1.6.2 – Creation of Novel Metabolic Networks in SBML format
- PITUFO – Find minimal sets of Precursors of Target Compounds in a Metabolic Network
- Rahnuma 1.1.1 – Prediction and Analysis of Metabolic Pathways and Comparison of Metabolic Networks
- FFCA 1.01 – Feasibility-based Flux Coupling Analysis of Metabolic Networks
- yasimSBML 1.0.1 – Simulate Metabolic Network depending on the Flux Distribution
- MetAnnoGen – Metabolic Network Annotation
- ExPA 050216 – Extreme Pathway Analysis for Metabolic Networks
- COBRA Toolbox 2.0.5 – MATLAB Scripts for Constraint-based Modeling of Metabolic Networks
- Convert2Sbml / Convert2Matlab – Convert Metabolic Network Source files into SBML / MATLAB files
- Rast2Systrip 1.0.4 – Reconstruct and View Metabolic Networks
- Metaboflux 2.0.6 – Predict Flux Distribution in Metabolic Networks
- MetaViz – Visualization software for Metabolic Network
- MOTUS 1.1.3 – Motif search in Metabolic Networks
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