GenomeMapper 0.4.4 – Short Read Mapping tool

GenomeMapper 0.4.4

:: DESCRIPTION

GenomeMapper is a short read mapping tool designed for accurate read alignments. It quickly aligns millions of reads either with ungapped or gapped alignments. It can be used to align against multiple genomes simulanteously or against a single reference. If you are unsure which one is the appropriate GenomeMapper, you might want to use the latter.

:DEVELOPER

Dept. Weigel

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C Compiler

:: DOWNLOAD

 GenomeMapper

:: MORE INFORMATION

Citation

Genome Biol. 2009;10(9):R98. Epub 2009 Sep 17.
Simultaneous alignment of short reads against multiple genomes.
Schneeberger K, Hagmann J, Ossowski S, Warthmann N, Gesing S, Kohlbacher O, Weigel D.

Mapping Tool 1.3 – Map Different Nomenclatures

Mapping Tool 1.3

:: DESCRIPTION

Mapping Tool is a tool to assist name mapping if different nomenclatures are used by different models (e.g. metabolic networks).

::DEVELOPER

The Computational Systems Biology Group

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / Mac /  Linux
  • Java

:: DOWNLOAD

 Mapping Tool

:: MORE INFORMATION

TMARG 1.0 – Association Mapping tool for Identifying Disease Associated Sites

TMARG 1.0

:: DESCRIPTION

TMARG is a program that takes SNP population haplotypes and case/control phenotypes to identify disease associated sites. TMARG takes the approach of inferring genealogical history (in the form of ancestral recombination graph or ARG) and then using the ARGs to map the trait.

::DEVELOPER

Yufeng Wu

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/Windows with Cygwin

:: DOWNLOAD

 TMARG

:: MORE INFORMATION

Citation

Yufeng Wu,
Association Mapping of Complex Diseases with Ancestral Recombination Graphs: Models and Efficient Algorithms,
ournal of Computational Biology. September 2008, 15(7): 667-684.