Manipulation
- iTOL 2.2.1 / iTOL Toolbar for Mozilla Firefox 1.0.5 – Display & Manipulation of Phylogenetic Trees
- SeqMaT – Sequence Manipulation Tool for Phylogenetic Analysis
- GP 0.26 / Arka 0.11 – Sequence Manipulation tools
- Mol2Mol 5.6.3 – Molecule File Manipulation & Conversion
- SMS 2 – Sequence Manipulation Suite
- REAP – Manipulation & Phylogenetic Analysis of Restriction Data
- PlasmaDNA 1.4.2 – PLAsmid MAnipulation program
- RnamlView 1.0 – Manipulation, Storage & Visualisation of RNA Data
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