MACH 1.0 – Haplotyping, Genotype Imputation & Disease Association Analysis

MACH 1.0

:: DESCRIPTION

MACH (Markov Chain Haplotyping) is a Markov Chain based haplotyper. It can resolve long haplotypes or infer missing genotypes in samples of unrelated individuals.

::DEVELOPER

Abecasis Lab

:: SCREENSHOTS

Command Line

:: REQUIREMENTS

  • Windows / Mac /  Linux

:: DOWNLOAD

MACH

:: MORE INFORMATION

Citation:

Li Y, Willer CJ, Ding J, Scheet P and Abecasis GR (2006)
MaCH: using sequence and genotype data to estimate haplotypes and unobserved genotypes.
Genet Epidemiol 34:816-834.

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Prob2plinkbig – Convert MACH probability files to PLINK dosage files

Prob2plinkbig

:: DESCRIPTION

Use Prob2plinkbig to convert large MACH probability files to PLINK dosage files.

::DEVELOPER

CTG (Complex Traits Genetics) Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux / MacOSX
  • Perl

:: DOWNLOAD

 Prob2plinkbig

:: MORE INFORMATION

RegionalHapMapExtractor – Extract a Region from HapMapII for MaCH imputation

RegionalHapMapExtractor

:: DESCRIPTION

RegionalHapMapExtractor is a software to extract a region from hapMapII for MaCH imputation

::DEVELOPER

Yun Li

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  Windows / MacOsX
  • Perl
:: DOWNLOAD

 RegionalHapMapExtractor

:: MORE INFORMATION