Library
- Bio++ 2.4.1 – C++ Libraries for Bioinformatics
- BIU 2.3.7 – Bioinformatic Utility Library
- pyDNase 0.2.4 – a Library for Analyzing DNase-seq data
- FRAGSION 1.0 – Protein Fragment Library Generation
- OBITools 1.2.6 – Scripts and Library for Sequence Analysis
- PrIME 1.0.5 – Library and Accompanying tools for Phylogenetics
- DART – Library includes a number of Bioinformatics Alignment Programs
- PLL 1.0.2 – Phylogenetic Likelihood Library
- OpenMM 6.3 / PyOpenMM 3.0.0 – Library for Molecular Modeling Simulation
- ImgLib2 2.4.1 – Image Processing JAVA Library
- ms-data-core-api 2.0.5 – Metadata-oriented Library for Computational Proteomics
- Brain 1.5.1 – Library for Biomedical Knowledge Manipulation
- GGL 4.1.1 – Graph Grammar Library
- SyBiL 1.3.0 / sybilSBML 2.0.10 / sybilFCF 0.2.1 – Systems Biology Library for R
- zipHMM 1.0.1 – Library for very fast Likelihood Computations for Hidden Markov Models
- e!DAL 2.3.9 – Electronic Data Archive Library
- Cytoscape.js 2.4.8 – Graph Theory Library for Visualisation and Analysis
- TRAL 0.3.5 – Tandem Repeat Annotation Library
- GeLL 2.0 – General Likelihood Library for use in Phylogenetics
- BEETL 1.1 – Burrows-Wheeler Extended Tool Library
- BioJS 2.0 – A library of JavaScript Components to Represent Biological Data
- rlsim 1.4 – Simulating RNA-seq library Preparation with Parameter Estimation
- zipHMM 1.0.1 – A highly optimised HMM library exploiting repetitions in the input to speed up the forward algorithm
- tqDist 1.0 – a Triplet and Quartet Distance Library
- Bioclojure – Functional Library for the Manipulation of Biological Sequences
- BiblioSpec 2.0 – Creat and Search MS/MS Peptide Spectrum Libraries
- ScalaBLAST 2.4.53 – Multiprocessor Implementation of the NCBI BLAST library
- PD5 1.5 – Software Library for the Development of Primer Design Applications
- Sleipnir 3.0 / COALESCE – Library for Computational Functional Genomics
- LibSBMLSim 1.1.0 – The library for Simulating SBML models
- InSilicoSpectro 1.3.24 – Open-source Proteomics Library
- GDL 1.1.0 – Genetic Data analysis Library
- SSPcompare – Takes a Library of known RNA Sequence-structure Pairs
- BN++ 1.1 – Biochemical Network Library
- GHMM 0.9 – General Hidden Markov Model library
- CGL 0.08 – Library designed to Facilitate the use of Genome Annotation
- Genoman – A Library for Accessing and Manipulating Genome Annotation data
- parredHMMlib 1.0 – Library for Hardware Accelerated HMM Parallelizing Analysis
- HMMlib 1.0.2 – Library for Hardware Accelerated HMM analysis
- SNPFile 2.0.1 – Library and API for Association mapping and Population Genetics