Spectacle 1.3 – Spectral learning for Annotating Chromatin Labels and Epigenomes

Spectacle 1.3

:: DESCRIPTION

Spectacle impelements a spectral learning algorithm for hidden Markov models for epigenomic data.

::DEVELOPER

Kevin Chen’s group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / WIndows
  • Java
  • Python

:: DOWNLOAD

 Spectacle

:: MORE INFORMATION

Citation:

Genome Biol. 2015 Feb 12;16(1):33. doi: 10.1186/s13059-015-0598-0.
Spectacle: fast chromatin state annotation using spectral learning.
Song J, Chen KC.

AxonTracker 1.0 – Track and Label Axon Structures

AxonTracker 1.0

:: DESCRIPTION

AxonTracker is useful to semi-automatically track and label axon structures from the motor axon connectome datasets. It is a parameter-free software, and hence can be used over a broad range of datasets.The software is designed with ease of use in mind. The interface is simple and includes a 3D visualization of the dataset along with a real-time overlay of the tracking results. A 2D view of the dataset is also provided in order to interact with the software. Three orthogonal views are provided with a provision for back-tracking the results. Points can be added/deleted from the tracking results to provide guidance in case of an error.

::DEVELOPER

TMHRI Center for Bioengineering and Informatics

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

AxonTracker

:: MORE INFORMATION

The download and usage is free for academic and non-commercial purposes and if used in research and publications, it should be referenced.