Inference
- StructHDP – Inference of number of Clusters and Population Structure from Admixed Genotype data.
- Spectrum – Joint Bayesian Inference of Population Structure and Recombination Events
- Infernal 1.1rc2 – Inference of RNA Alignment
- Inferelator 2013.3.RC3 – Genetic Regulatory Networks Inference algorithm
- RAxML 7.4.2 / RAxML Workbench 1.0 – Sequential and Parallel Maximum Likelihood based inference of large phylogenetic trees
- PAINT 1.0_beta60 – Phylogenetic Annotation and INference Tool
- iFad 2.0 – An integrative Factor Analysis Model for Drug-pathway Association Inference
- FacPad 2.0 – Bayesian Sparse Factor Modeling for the Inference of Pathways responsive to Drug Treatment
- PSMix 1.1-2 – Population Structure Inference
- Optimist 20120420 – Inference of Positive Selection
- treemix 1.11 – Inference of Population Trees with Admixture
- ParentChecker 1.0 – Inference of Missing Parental Genotype Calls and Linkage Phase Correction
- BNFinder 2.0.2 – Bayesian Network Topology Inference
- GenomeSignatureTree 1.0 – Alignment-free Inference of Genome Trees
- hapassoc 1.2-6 – Inference of Trait Associations with SNP Haplotypes and other attributes using the EM Algorithm
- HAPI-UR 1.01 – HAPlotype Inference for UnRelated samples
- MaRIboES 2.1.0 – Metabolite and Reaction Inference based on Enzyme Specificities
- TINGe 1.061 / GeNA 0.1 – Gene Networks Inference and Analysis
- GENIE3 – Inference of Gene Regulatory Networks from Expression data
- QuasiRecomb 0.2 – Inference of Quasispecies subjected to Recombination
- Ancestor – Inference of Ancestral Amino Acid Sequences by the Distance-Based Bayesian Method
- Anc-gene – Inference of Ancestral Gene Sequences by the Distance-Based Bayesian Method
- GIGA 1.1.1 – Gene Tree Inference in the Genomic Age
- HMC 0.9.1 – Haplotype Inference tool based on Markov Chain model
- NET-SYNTHESIS – Synthesis, Inference and Simplification of Signal Transduction Networks
- ANAT 20111212 – Inference and Analysis of Functional Networks of Proteins
- Cytoprophet 1.0 – A Cytoscape plug-in for Protein and Domain Interaction Networks Inference
- EFICAz 2.5 – Accurate Sequence based Approach to Enzyme Function Inference
- TFInfer 1.0 – Inference of Transcription Factor Activities from Microarray data
- IPHULA / pIPHULA 1.16 – Inference of Population History Using a Likelihood Approach
- MrBayes 3.2.1 – Bayesian Inference of Phylogeny
- SNAP Workbench 2.0 – Analysis programs for making Inferences on Population processes
- GESTE 2.0 – GEnetic STructure inference based on genetic and Environmental data
- ClonalFrame 1.2 – Inference of Bacterial Microevolution using Multilocus Sequence data
- FACIL 1.0 – Fast and Accurate Genetic Code Inference and Logo
- Int-Path – Causal Gene Identification and Gene Regulatory Pathway Inference
- Chaplin 1.2.3 – Case-control Haplotype Inference package
- DIYABC 1.0.4.46beta – Approximate Bayesian Computation for Inference on Population history
- SMILE 1.47 – Structured Motif Inference and Evaluation
- PhyloPed 0.4 – Haplotype Inference in Pedigrees
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