VDJtools 1.2.1 – Post-analysis of Immune Repertoire Sequencing data

VDJtools 1.2.1

:: DESCRIPTION

VDJtools is a comprehensive framework for post-analysis of immune repertoire sequencing data.

::DEVELOPER

Immuno-sequencing Algorithms Group

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux
  • JRE
:: DOWNLOAD

 VDJtools

:: MORE INFORMATION

Citation:

VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires.
Shugay M, Bagaev DV, Turchaninova MA, Bolotin DA, Britanova OV, Putintseva EV, Pogorelyy MV, Nazarov VI, Zvyagin IV, Kirgizova VI, Kirgizov KI, Skorobogatova EV, Chudakov DM.
PLoS Comput Biol. 2015 Nov 25;11(11):e1004503. doi: 10.1371/journal.pcbi.1004503.

EPITOPEFINDER 0.11 – Finding Immune Epitopes

EPITOPEFINDER 0.11

:: DESCRIPTION

epitopefinder is a Python package for analyzing immune epitopes in a protein, where the epitopes are mined from the Immune Epitope Database.

::DEVELOPER

Bloom Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

 EPITOPEFINDER

:: MORE INFORMATION

Citation

L. Ian Gong and Jesse D. Bloom.
Epistatically interacting substitutions are enriched during adaptive protein evolution.”
PLoS Genetics. 10:e1004328 (2014)