Identification
- Plasmo2D 1.0 – Aid Identification of Proteins from Plasmodium Falciparum
- GSCA 1.1.1 – Identification of Differentially Co-expressed Gene Sets
- EB-HMM 1.0-1 – Identification of Genes Differentially Expressed across 2 or more Conditions over Time
- miRTRAP 20120110 – Identification of miRNAs from High Throughput Sequencing data
- Neighborhood Correlation 2.1 – Homology Identification
- AbundantOTU+ 0.92b – Identification and Quantification of Abundant Species from Pyrosequences of 16S rRNA
- Marina 1.01 – Identification of Over/under-represented TFBSs given large sets of Promoter-sequences
- IRMa 1.31.1 – Validation of MS Peptides Identification
- MosaicFinder – Identification of Fused Gene Families in Sequence Similarity Networks
- ExonVisualiser – Exon Identification & Visualization in Protein Structures
- InforBIO 5.28 – E-Workbench for Databasing, Classification & Identification of Microbes
- GESTODifferent 1.0 – Cytoscape plugin for the Identification of Boolean Gene Regulatory Networks describing the stochastic differentiation process
- SubSeqer – Detection and Identification of Repetitive Elements in low-complexity Sequences
- SIRIUS2 1.0 – Identification of Metabolites using single and Tandem Mass Spectrometry
- TFpredict 1.1 – Identification and Structural Characterization of Transcription Factors
- GWAS Pathway Identifier 1.0.0 – Pathway- and Protein-Interaction-Based Identification of Disease Specific SNP Sets in GWAS
- MIDIA 1.1 – Modularization Identification by Dynamic Independence Algorithms
- SeqSite 1.1.2 – ChIP-Seq Binding Site Identification
- InFiRe 1.0 – Identification of Transposon Insertion Sites in known bacterial Genome
- SCide – Identification of Stabilization Centers in Proteins
- SRide – Identification of Stabilizing Residues in proteins
- SNAP 2.2 – Identification and Annotation of proxy SNPs using HapMap
- GibbsModule – Multispecies de novo Identification of Cis-regulatory Motifs and Modules
- SSPred – Identification & Classification of Proteins involved in Bacterial Secretion Systems
- X!TandemPipeline 3.3.0 – Peptide / Protein Identifications from MS/MS Mass Spectra
- ConSurf 2010 – Identification of Functional Regions in Proteins
- RetroTector / RetroTectorviewer 1.0.1 – Identification and Characterization of Proviral Sequences in Vertebrate Genomes
- MR-MSPOLYGRAPH / MSPolygraph 1.61 – MapReduce Implementation of a Hybrid Spectral Library-Database Search Method for Large-scale Peptide Identification
- pClust 1.0 – Parallel Identification of Dense Protein Clusters
- MGEScan-LTR / MGEScan-non-LTR v2 – Identification of LTR/ Non-LTR Retroelements
- Riboswitch finder – Identification of Riboswitch RNAs
- GibbsOS V3 – Robust Identification of Transcriptional Regulatory Networks using a Gibbs Sampler on Outlier Sum Statistic
- Dragon Desert Masker -Transcription Initiation Desert Identification
- iHMMune-align 20071126 – Hidden Markov model-based Alignment and Identification of Germline Genes
- SLICSel 1.1 – Design Specific Oligonucleotide Probes for Microbial Detection and Identification
- LcaMap – Simultaneous Identification of Duplications, Losses and Lateral Gene Transfers
- Oligomap 1.01 – Identification of nearly-perfect matches of small RNAs in Sequence databases
- Selecton 2.4 – Identification of Site-Specific Positive Selection & Purifying Selection
- AMIGO R2011a1 – Advanced Modelling and Identification using Global Optimization
- FastER 1.0 – Identification of Genes with Fast-evolving Regions in closely related Genomes
- MASPECTRAS 2.3 – Integrate MS protein Identification
- NSMAP 0.1.0 – Spliced Isoforms Identification and Quantification from RNA-Seq
- RepeatModeler 1.0.5 – de-novo Repeat Family Identification and Modeling package
- IRiS – Identification of Recombinations in Sequences
- SCOPE 2.1.0 – Suite for Computational identification Of Promoter Elements
- DPD – Identification and Quantification of the Protein
- GENSCAN 20030218 – Identification of complete Gene Structures in Genomic DNA
- riboPicker 0.4.3 – Identification and Removal of rRNA-like Sequences.
- Scipio 1.4 – Uukaryotic Gene Identification
- T-REKS – Identification of Tandem Repeats
- MetISIS 1.0 – Metabolite In Silico Identification Software
- MISA – MIcroSAtellite Identification Tool
- SPAM 3.7b – Genetic Stock Identification Software
- mSD – Regulatory Module Identification
- BMRF – Pathway Network Identification
- FT-ARM – Identification and Quantification of Multiplexed High-resolution
- ClustEx 0.31 – Responsive Gene Module Identification package
- MICSA – Identification of Transcription Factor binding sites in ChIP-Seq data
- BreakSeq 1.3 – Structural Variants Annotation and Identification pipeline
- IDEG 6.2 – Identification of Differentially Expressed Genes in Multiple Tag Sampling Experiments
- Clippers 0.0.9 – Deletion Identification Program using Periodic Spaced Seed
- cBar 1.2 – Identification of Chromosomal Sequence Fragments from Metagenome data
- KOBAS 2.0 – Annotation and Identification of Enriched Pathways and Diseases
- SEGID – Conserved Segment Identification
- ONCOR 20080424 – Genetic Stock Identification
- MDLBlockFinder 1.1 – Haplotype Block Identification
- HaploBlock 1.2 – Haplotype Block Identification and Resolution for High-density SNP data.
- Alien_hunter 1.7 – Interpolated Variable Order Motifs for Identification of Horizontally Acquired DNA
- OMSSA 2.1.9 – MS/MS Peptide Spectra Identification
- GBIRP – Genotype-Based Identification of Relative Pairs
- TFBSfinder – Yeast Transcription Binding Site Identification
- KIRMES 0.8 – Kernel-based Identification of Regulatory Modules in Euchromatic Sequences
- RECON 1.05 – Identification of Repeat Families from Genomic Sequences
- Cycloquest 20110907 – Identification of Cyclopeptides via Database Search
- Novel miRNA detection 1.0 – Identification of novel miRNA genes
- Vocabulon 1.0 – Identification of Conserved Words in DNA Sequence
- PrimerHunter 1.0.2 – Primer Design for PCR-Based Virus Subtype Identification
- MetWAMer 1.3.1 – Translation Initiation Site (TIS) Identification
- Superficial 1.2 – Identification of Potential Epitopes or Binding Sites
- ICSF – Identification of Conserved Structural Features
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