HIVcleave – Predicting HIV Protease Cleavage Sites in Proteins

HIVcleave

:: DESCRIPTION

HIVcleave is a web-server for predicting HIV protease cleavage sites in proteins

::DEVELOPER

Computational Systems Biology Group, Shanghai Jiao Tong University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation:

Anal Biochem. 2008 Apr 15;375(2):388-90. doi: 10.1016/j.ab.2008.01.012. Epub 2008 Jan 15.
HIVcleave: a web-server for predicting human immunodeficiency virus protease cleavage sites in proteins.
Shen HB1, Chou KC.

HIVcoPRED – Prediction of HIV Coreceptor Usage

HIVcoPRED

:: DESCRIPTION

HIVcoPRED is a web server developed for predicting the coreceptor usage by HIV-1. It takes amino acid sequences of Variable loop (V3) of gp120 protein of HIV and predicts the coreceptor used by the HIV strain.

::DEVELOPER

HIVcoPRED team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

PLoS One. 2013 Apr 15;8(4):e61437. doi: 10.1371/journal.pone.0061437. Print 2013.
Hybrid approach for predicting coreceptor used by HIV-1 from its V3 loop amino acid sequence.
Kumar R1, Raghava GP.

SPMM – Estimating Infection Duration of Multi-variant HIV-1 Infections

SPMM

:: DESCRIPTION

SPMM (Shifted Poisson Mixture Model) estimates the infection duration of a single variant or multi-variant HIV infections based on the characteristics of HIV transmission and early evolution.

::DEVELOPER

LEE RESEARCH GROUP

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

SPMM: estimating infection duration of multi-variant HIV-1 infections.
Love TM, Park SY, Giorgi EE, Mack WJ, Perelson AS, Lee HY.
Bioinformatics. 2015 Dec 31. pii: btv749.