GHap 1.2.1 – Genome-Wide Haplotyping

GHap 1.2.1

:: DESCRIPTION

The GHap R package was designed to call haplotypes from phased marker data.

::DEVELOPER

Yuri Tani Utsunomiya<ytutsunomiya at gmail.com>, Marco Milanesi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / Windows
  • R

:: DOWNLOAD

  GHap

:: MORE INFORMATION

Citation

GHap: An R package for Genome-wide Haplotyping.
Utsunomiya YT, Milanesi M, Utsunomiya AT, Ajmone-Marsan P, Garcia JF.
Bioinformatics. 2016 Jun 9. pii: btw356.

GenomeLaser – Haplotyping from Pedigree Genotypes

GenomeLaser 1.5

:: DESCRIPTION

GenomeLaser is a tool for haplotype inference from pedigree genotypes.

::DEVELOPER

GenomeLaser team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Python

:: DOWNLOAD

 GenomeLaser

:: MORE INFORMATION

Citation

GenomeLaser: fast and accurate haplotyping from pedigree genotypes.
Li W, Fu G, Rao W, Xu W, Ma L, Guo S, Song Q.
Bioinformatics. 2015 Aug 18. pii: btv452.

MML – Haplotyping using both Family and Population Infomation

MML

:: DESCRIPTION

MML (Mendalian Constrained Maximum Likelihood) is a software to analyze haplotype polymorphisms in a real human population.

::DEVELOPER

Xin Li 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux

:: DOWNLOAD

 MML

 

:: MORE INFORMATION

Citation

Xin Li, Yixuan Chen and Jing Li.
Detecting Genome-wide Haplotype Polymorphism by Combined Use of Mendelian Constraints and Local Population Structure.
Pacific Symposium on Biocomputing 15:348-358(2010).