srnaloop – Search long DNA/RNA Strings for small RNA Hairpin Loops

srnaloop

:: DESCRIPTION

srnaloop searchs long DNA/RNA strings for small RNA hairpin loops that may be candidates for small RNA regulatory sequences.

::DEVELOPER

George M. Church Laboratory

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux
  • C Compiler

:: DOWNLOAD

 srnaloop

:: MORE INFORMATION

Citation

Mol Cell. 2003 May;11(5):1253-63.
Computational and experimental identification of C. elegans microRNAs.
Grad Y1, Aach J, Hayes GD, Reinhart BJ, Church GM, Ruvkun G, Kim J.

RNAparametric – Computing the Probability of RNA Hairpin and Multiloop Formation

RNAparametric

:: DESCRIPTION

RNAparametric is the RNA parametric structure webserver.

::DEVELOPER

Clote Lab 

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  Mac OsX / Windows
  • C Compiler

:: DOWNLOAD

 RNAparametric

:: MORE INFORMATION

Citation:

J Comput Biol. 2014 Mar;21(3):201-18. doi: 10.1089/cmb.2013.0148. Epub 2014 Feb 21.
Computing the probability of RNA hairpin and multiloop formation.
Ding Y1, Lorenz WA, Dotu I, Senter E, Clote P.

RNAmicro 1.1.3 – Hairpins in a Haystack

RNAmicro 1.1.3

:: DESCRIPTION

RNAmicro is a sftware of recognizing microRNA precursors in comparative genomics data.

::DEVELOPER

Jana Hertel

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

  RNAmicro

:: MORE INFORMATION

Citation

Hairpins in a Haystack: recognizing microRNA precursors in comparative genomics data.
Bioinformatics. 2006 Jul 15;22(14):e197-202.
Hertel J, Stadler PF.