mcaGUI 1.16.0 – Microbial Community Analysis Graphical User Interface

mcaGUI 1.16.0

:: DESCRIPTION

mcaGUI is a microbial community analysis GUI for R using gWidgets.

::DEVELOPER

Wade K. Copeland

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux / MacOsX
  • R
  • BioConductor

:: DOWNLOAD

 mcaGUI

:: MORE INFORMATION

Citation:

Bioinformatics. 2012 Aug 15;28(16):2198-9. doi: 10.1093/bioinformatics/bts338. Epub 2012 Jun 12.
mcaGUI: microbial community analysis R-Graphical User Interface (GUI).
Copeland WK1, Krishnan V, Beck D, Settles M, Foster JA, Cho KC, Day M, Hickey R, Schütte UM, Zhou X, Williams CJ, Forney LJ, Abdo Z.

affylmGUI 1.42.0 – Affymetrix linear modeling Graphical User Interface

affylmGUI 1.42.0

:: DESCRIPTION

affylmGUI is a Graphical User Interface for analysis of Affymetrix microarray data, using the limma package (Linear Models for MicroArray data). affylmGUI is for Affymetrix data only.

::DEVELOPER

WEHI Bioinformatics

:: SCREENSHOTS

affylmGUI

:: REQUIREMENTS

:: DOWNLOAD

 affylmGUI

:: MORE INFORMATION

Citation

affylmGUI: a graphical user interface for linear modeling of single channel microarray data.
Wettenhall JM, Simpson KM, Satterley K, Smyth GK.
Bioinformatics. 2006 Apr 1;22(7):897-9. Epub 2006 Feb 2.

limmaGUI 1.44.0 – Linear Models for Microarrays Graphical User Interface

limmaGUI 1.44.0

:: DESCRIPTION

limmaGUI is a Graphical User Interface for Gordon Smyth’s limma package (Linear Models for MicroArray data). It uses state-of-the-art statistical techniques to normalize microarray data, perform diagnostic plots and to find differentially expressed genes in complex experimental designs.

::DEVELOPER

WEHI Bioinformatics

:: SCREENSHOTS

limmaGUI

:: REQUIREMENTS

:: DOWNLOAD

 limmaGUI

:: MORE INFORMATION

Citation

Bioinformatics. 2004 Dec 12;20(18):3705-6. Epub 2004 Aug 5.
limmaGUI: a graphical user interface for linear modeling of microarray data.
Wettenhall JM, Smyth GK.

AutoAssemblyD 0.1 – Graphical User Interface system for several Genome Assembler

AutoAssemblyD 0.1

:: DESCRIPTION

The AssemblyD is a software which performed the local and remote genome assembly by several assemblers based on an XML Template which can replace the large command lines required by most assemblers.

::DEVELOPER

AutoAssemblyD team

:: SCREENSHOTS

AutoAssemblyD

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Java

:: DOWNLOAD

 AutoAssemblyD

:: MORE INFORMATION

Citation

Bioinformation. 2013 Sep 23;9(16):840-1. doi: 10.6026/97320630009840. eCollection 2013.
AutoAssemblyD: a graphical user interface system for several genome assemblers.
Veras AA1, de Sá PH, Azevedo V, Silva A, Ramos RT.

Gabedit 2.4.8 – Graphical User Interface to Computational Chemistry Packages

Gabedit 2.4.8

:: DESCRIPTION

Gabedit is a graphical user interface to computational chemistry packages like Gamess-US, Gaussian, Molcas, Molpro, MPQC, OpenMopac, Orca, PCGamess and Q-Chem

::DEVELOPER

Abdul-Rahman ALLOUCHE

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows/Linux

:: DOWNLOAD

 Gabedit

:: MORE INFORMATION

Citation

A.R. ALLOUCHE,
Gabedit – A graphical user interface for computational chemistry softwares,
Journal of Computational Chemistry, 32 (2011) 174-182. DOI: 10.1002/jcc.21600

guiLiner 0.4 – Graphical User Interface for Biological Analysis Software

guiLiner 0.4

:: DESCRIPTION

GuiLiner is a generic, extensible and flexible front-end designed to “host” a wide variety of data analysis or simulation programs.Scientific application developers who produce a correctly formatted XML file describing their program’s options and some of its documentation can immediately use GuiLiner to produce a carefully implemented GUI for their analysis or simulation programs.

::DEVELOPER

Eric C. Anderson and Nicholas C. Manoukis

:: SCREENSHOTS

guiLiner

:: REQUIREMENTS

  • Linux/ MacOsX/ Windows
  • Java

:: DOWNLOAD

 guiLiner

:: MORE INFORMATION

QUERY_WIN – Retrieval Program with Graphical User Interface for ACNUC Databases

QUERY_WIN

:: DESCRIPTION

QUERY_WIN is a retrieval program with a graphical user interface for ACNUC databases . It can query any ACNUC database, e.g., for nucleotide of protein sequences.

::DEVELOPER

Manolo Gouy

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux/Windows/MacOsX/Solaris

:: DOWNLOAD

 QUERY_WIN

:: MORE INFORMATION

Citation

Gouy M. & Delmotte S. (2008)
Remote access to ACNUC nucleotide and protein sequence databases at PBIL.
Biochimie 90:555-562.

jSim for Gromacs 0.63b – Graphical User Interface for Gromacs

jSim for Gromacs 0.63b

:: DESCRIPTION

jSim for Gromacs is a Graphical User Interface for the Molecular Dynamics Package Gromacs. It has a project style interface to organize your md simulations. It is also possible to start md simulations on remote computers with ssh.

::DEVELOPER

Bob Morane

:: SCREENSHOTS

:: REQUIREMENTS

:: DOWNLOAD

 jSim for Gromacs

:: MORE INFORMATION