Genome
- BopGenomes – Compares Genomes in terms of the Presence/Absence of short DNA Segment
- Ray 2.2.0 – Parallel Genome Assemblies for Parallel DNA sequencing
- Arachne 4.6233 – Whole-genome Shotgun Assembler
- EagleView 2.2 – Genome Assembler Viewer
- Artemis 15.0.6 – Genome Browser and Annotation Tool
- GGB 1.0 – Visualization of Systems Biology data in context of the Genome
- GenPlay v584 – Genome Analyzer and Browser
- Sequence Maneuverer – Sequence Extraction from Genomes
- gKaKs 1.2.2 – Genome level calculate Ka/Ks
- Readscan 0.5 – Pathogen Discovery program with accurate genome relative abundance estimation.
- Atlas2 1.4.3 / Atlas2Cloud 0.5 – Genome Analysis Suite
- GenomeTools 1.5.0 – Genome Analysis Software
- Apollo 1.11.8 – Genome Annotation Viewer & Editor
- RLZ 0.1.1 – Relative Lempel-Ziv Compression of Genomes for Large-Scale Storage and Retrieval
- AceDB 4.9.60 – Genome Database System
- Genome 1.1 – Genetic Sequencer for the iPhone and iPod touch
- inGeno 0.6 – Integrated Genome and Ortholog Viewer
- Caryoscope 0.4.0 – View Gene Expression Data in Genome
- GAM-NGS – Genome Assemblies Merger for Next Generation Sequencing
- MANTiS 1.1 – Phylogenetic Framework for Multi-species Genome Comparisons
- JSpecies 1.2.1 – Measure the Probability if two Genomes belonging to the Same Species
- DISSECT 1.0.2 – Transcriptome-to-Genome Alignment Tool
- DAGchainer 20080206 – Computing Chains of Syntenic Genes in Complete Genomes
- DAWGPAWS 1.1 – Genome Annotation Pipeline
- Varclus – Detection of Positive Selection in Genes and Genomes through Variation Clusters
- GRAST 1.0 – Genome Reduction Analysing Software Tool
- PentaPlot 20040723 – Illustration of Genome Mosaicism
- Pathoscope 0.1 – Take NGS reads from a mixture sample of Multiple Strains of Genomes
- Breakpoint Calculator 0.2 – Calculate Breakpoint Counts for each pair and triplet of Genomes
- DriverNet 1.0.0 – Predict Functional Important Driver Genes in Cancer Genome
- GeSICA 1.0.2 – Genome Segmentation from Intra-Chromosomal Associations
- MAKER 2 20120722 – Genome Annotation pipeline
- Crossbow 1.2.0 – Whole Genome Resequencing Analysis
- FastER 1.0 – Identification of Genes with Fast-evolving Regions in closely related Genomes
- ACIB PGDB Toolbox 1.0 – Create, Maintain and Query Pathway/Genome Databases
- AAT 20110305 – Analysis & Annotation of Genomic Sequences
- MGRA 1.0 – Multiple Genome Rearrangements and Ancestors
- DiProGB 20100209 – The Dinucleotide Properties Genome Browser
- FR-HIT 0.7 – Recruit Metagenomic Reads to Homologous Reference Genome
- ASAP 0.1.2 – Align a Sequencing to two Genomes at the Same Time
- Spa – Align cDNA sequences to Genome
- GeneSyn 1.0 – Detect Conserved Gene Order across Genomes
- SatFind – C-program for Finding Satellites in Genomes
- MuMRescueLite 20090522 – Use the Tag Sequencies of mapped to Multiple Loci to the Genome
- GRIL 1.0.0 – Genome Inversion and Rearrangement Locator
- ASAP 1.4.1 – A Systematic Annotation Package for Community Analysis of Genomes
- MPscan – Index free Mapping of multiple short reads on a Genome
- Genomedata 1.3.2 – Storage of Multiple Tracks of Numeric data Anchored to Genome
- Segway 1.1.0 – a way to Segment the Genome
- ColinearScan 1.01 – Dynamic Programming for Colinearity Analysis of Genomes
- Rice-Map 1.0 – Rice Genome Browser
- REEF – Search REgionally Enriched Features in Genomes
- WEAV 0.2 – de novo Assembly program for both Genome and RNA
- Tagger 1.3 – Genome/Transcriptome-wide Tag Scanner
- ComPhy – Genome Composite Distance Phylogeny for whole-genome phylogeney inferences
- CTRD – Computing Translocation Distance between Genomes
- Phobos 3.3.12 – Tandem Repeat search tool for Complete Genomes
- SeqMap 1.0.13 – Map Millions of Short Sequences to Genome
- CAP3 / PCAP – Sequence and Genome Assembly Programs
- Enredo 0.5 – Produce Colinear Segments from Extant Genomes
- Restauro-G 1.0 – Genome Re-Annotation System for Comparative Genomics
- G-language 1.8.13 – Genome Analysis Environment
- ZCURVE 1.0 / ZCURVE_CoV 1.0 / ZCURVE_V 1.0 – Recognize Protein Coding Genes in Genomes
- MyRAST r44 – Annotate Genome
- Pairagon 1.1 – Pair-HMM based cDNA-to-genome Alignment
- Murasaki 1.68.6 – Find Anchors from Multiple Genomes
- BlatView – Mapping EST’s to Genomes
- GENOME 0.2 – Rapid Coalescent-based Whole Genome Simulator
- xMAN 20060717 – MAp OligoNucleotides to Subject Genome
- Mauve 2.3.1 – Multiple Genome Alignments
- Metasim 0.9.5 – Sequencing Simulator for Genomes and Metagenomes
- PHIRE 1.00 – Reveal Regulatory Elements in Bacteriophage Genomes
- Ebbie-MM 4.3 – Analyze Single Mismatches of Small RNAs to the genome
- RNAv – Search Genomes for RNA Secondary Structure Variation
- RNATOPS 1.2 – RNA Pseudoknot Search in Genomes
- RepeatAround 2.1 – Find Repeats in Circular Genomes
- GenomePixelizer 2003.10.1 – Genome Visualization Tool
- DNAPlotter 1.4 – Circular & Linear Interactive Genome Visualisation
- Metal 20110325 – Meta-analysis of Genomewide Association Scans
- SeedMasker – Genome Masking based on High Occurrence Words
- VAAL 1.6 – Genome Variant Detection
- ALLPATHS-LG – Whole Genome Shotgun Assembler
- GEvolutionS – Genome Evolution Simulation
- DCJ – Genome Rearrangement
- eGATU – easy Genome Annotation Transfer Utility
- CodonStatistics – Browse Statistical Information on Genomes
- GFS – Genome-based Fingerprint Scanning
- GATU – Genome Annotation Transfer Utility
- Base-By-Base – Genome Pairwise & Multiple Alignment Editor
- VariantClassifier 20100603 – Hierarchical Variant Classifier for Annotated Genomes
- AutoEditor 1.20 – Automated Correction of Genome Sequence Errors
- PhyloNet v2b – Motif Discovery at Whole Genome Level
- HMDFinder – Methylation Prediction in Human Genome
- LuceGene 1.4 – Search System for Genome & Bioinformatic Databases
- Flash GViewer 0.5 – Customizable Flash Movie to Display Chromosome in Genome
- MAGIC Tool 2.1 – MicroArray Genome Imaging & Clustering Tool
Recent Comments