SigHunt – Horizontal Gene Transfer Finder optimized for Eukaryotic Genomes

SigHunt

:: DESCRIPTION

SigHunt analyses genomic signature of a DNA sequence and outputs the score DIAS.

::DEVELOPER

Institute of Biostatistics and Analyses, Masaryk University

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • R

:: DOWNLOAD

 SigHunt

:: MORE INFORMATION

Citation

SigHunt: horizontal gene transfer finder optimized for eukaryotic genomes.
Jaron KS, Moravec JC, Martínková N.
Bioinformatics. 2014 Feb 6.

LcaMap – Simultaneous Identification of Duplications, Losses and Lateral Gene Transfers

LcaMap

:: DESCRIPTION

LcaMap is a software for simultaneous identification of duplication, losses and lateral gene transfers. LcaMap takes a gene tree G, a species tree S, and the costs of a lateral gene transfer, a gene duplication, and a gene loss as its input. It outputs all minimum-cost LCA-reconciliations between G and S.

::DEVELOPER

Lusheng Wang

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux

:: DOWNLOAD

 LcaMap

:: MORE INFORMATION