Gene Expression
- BRB-ArrayTools 4.3.0 Beta3 – Visualization & Analysis of DNA Microarray Gene Expression Data
- FreeView & FreeOView – Gene Expression Dendrogram Viewer & Optimizer
- BADGE 1.0 – Bayesian Analysis of Differential Gene Expression
- GEDAS – Gene Expression Data Analysis Suite
- OncodriveCIS 1.1.0 – Assesses the Influence of Copy Number Alterations (CNA) in the Gene Expression
- DIRAC – Studying Gene Expression within Pathways
- GEMINI – Gene Expression and Metabolism Integrated for Network Inference
- Caleydo 2.2 – Pathway and Gene Expression Visualization
- YANAsquare 201212 / YANAvergence – Integrated Network Reconstruction, Visualization and Analysis
- Simcluster 0.9.2 – Clustering Enumeration Gene Expression data on the Simplex Space
- GeneShelf – Web-based Visual Interface for Large Gene Expression Time-series Data Repositories
- XcisClique – Integrating Gene Expression and Motif Combinations in Arabidopsis thaliana
- SAFEGUI 1.0 – Resampling-based Tests of Categorical Significance in Gene Expression data made easy
- EDISA 1.0 – Extracting Biclusters from multiple Time-series of Gene Expression Profiles
- EXPANDER 6.06 – Gene Expression Analysis & Visualization
- POE 0.2-7 – analysis of Gene Expression Microarrays using Three-component Mixtures
- Myrna 1.2.0 – Cloud-scale Differential Gene Expression for RNA-seq
- EDGE 1.1.291 – Extraction of Differential Gene Expression
- SIGNATURE 20111025 – Gene Expression Signature Analysis
- HyperPrior – Classify Gene Expression and ArrayCGH data with Prior knowledge
- LGEpred – Correlation Analysis and Prediction of Genes Expression from Amino Acid Sequence of Proteins
- TriCluster / MicroCluster – Microarray Gene Expression Clustering
- GETM 20100519 – Gene Expression Text Miner
- SNPExpress – Visualization of Gene Expression, DNA copy number and Genotype data
- SLocX - Prediction of Protein subcellular localization using Gene Expression
- MetaGeneAlyse – Analysis of Gene Expression and Metabolite data
- dChip 2011.12 – Analysis & Visualization of Gene Expression & SNP Microarrays
- MARQ – Mine GEO for Experiments with Similar or opposite Gene Expression Signatures
- PreP +07 – Gene-Expression Data Pre-Processing Tool
- Babelomics 4.3 – Gene Expression and Functional Profiling Analysis Suite
- Asterias – Applications for the Analysis of Gene Expression and aCGH data
- dictyExpress 1.5 – Dictyostelium Gene Expression Analysis
- Bimax – Systematic Comparison and Evaluation of Biclustering Methods for Gene Expression Data
- MSBE 1.0.5 – Analysis of Gene Expression data using a new bi-clustering method
- Genevar 3.2.0 – GENe Expression VARiation
- GeneExplorer 2.1.0 – Simulation of Gene Expression
- VAMPIRE – Interpret Microarray Gene Expression Data
- BTW 1.0 – Web Server for Gene Expression Time series Boltzmann Time Warping
- MVQueries – Classify Short Gene Expression Time-courses
- GQL 1.0 – GHMM-based tool for Querying and Clustering Gene-Expression time-course data
- SeqExpress 1.3.2 – Analysis and Desktop Visualisation program for Gene Expression Experiments
- FunCluster 1.07 – Functional Analysis of Gene Expression data
- TimeClust 1.3 – Clustering tool for Gene Expression Time Series
- Prf-browser 2.6 – Browse and Display Gene Expression Profiles
- Peak-mapper 2.7 – Find Disconcordances in Gene Expression, shared by many gene pair orthologs
- AVF-filter 2.4 – Find Noisy Datasets, Measure Periodicity of Gene Expression
- GSIM – Microarray Gene Expression Simulator
- PaGE 5.1.6 – Patterns from Gene Expression
- GPODE – Learning Gene Regulatory Networks from Gene Expression Measurements
- DSection – Probabilistic Analysis of Gene Expression Measurements from Heterogeneous Tissues
- EMOGEE 20070704 – Estimator for MOdels of Gene Expression Evolution
- CIST – Analysis of Gene Expression data Generated using SAGE
- GeneProgram 0.1 – Discovery of Functional Generality of Gene Expression programs
- SVN – Remove Systematic Variation in Microarray Gene Expression data
- PAGE – Phase-shifted Analysis of Gene Expression
- ProbePlus 1.0 – Analytic Tool for Analyzing Affymetrix GeneChip Gene Expression Array Data
- XPN – Merging Two Gene-expression studies via cross-platform normalization
- Gene Ontology Browser 0.92 – Map Microarray Gene Expression data onto the GeneOntology
- BayesMix 0.8.8 – Perform Model-based Inference for Differential Gene Expression
- GENECLUST 1.0.1 – Exploratory Analysis of Gene Expression Microarray data
- GEOSS 2.6.1 – Gene Expression Open Source System
- qcalculator 1.0 – Calculate Relative mRNA Gene Expression
- Genevestigator V3 – Gene Expression Search Engine
- GEPIS – Gene Expression Profiling in silico
- BAGEL 4.1.1 – Bayesian Analysis of Gene Expression Levels
- Java Treeview 1.1.6r2 – Gene Expression Visualization Tool
- TRANS-MNET 20070315 – Time Series Analysis of Gene Expression Profiles
- SAGAT 1.0 – Svd Augmented Gene expression Analysis Tool
- FCAnalysis 1.0.0 – Independent Component Analysis for Mining Gene Expression Data
- SageExpress 1.0 – Process SAGE-Seq High Throughput Gene Expression Data Set
- BicOverlapper 1.4 – Visual Analysis of Gene Expression
- REDUCE Suite v2.0 – Model Regulation of Gene Expression by Transcription Factors
- ENIGMA 1.1 – Extract Gene Expression Modules from Perturbational Microarray Data
- ArrayMiner 5.3 – Microarray Gene Expression Data Analysis
- CAGED 1.1 – Cluster Analysis of Gene Expression Dynamics
- Spotfinder v3.2.1 – Microarray Images Analysis & Gene Expression Quantification
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