Gene
- KELLER – Estimate Time-varying Interactions between Genes
- Primer Wizard – Speed up the Cloning of Coding Regions of a Gene via PCR method
- OncodriveCLUST 0.2 – Identify Genes whose Mutations are biased towards a large Spatial Clustering
- QUEXT – Find Relationships between Genes
- Graphviz 2.30 + SBOLv 1.0 – Easy Drawing of promoter->gene->terminator Diagrams
- SimGene 1.0.3 – Provide Gene and Transcript Cross Reference Information
- YeastGenome 1.8 – Find Information about Saccharomyces cerevisae Genes
- Human Genome 1.0.2 – Obtain information about a known Gene
- OrientationChecker 1.0 – Check Orientation of 16S rRNA Gene Sequences
- GNAT 1.22 – Gene / Protein Named Entity Recognition and Normalization software
- pubmed2ensembl – Link Publications in PubMed to Genes in Ensembl
- Exalign 1.0 – Gene Structural Alignments and Database Search
- TARGeT – Tree Analysis of Related Genes and Transposons
- Varclus – Detection of Positive Selection in Genes and Genomes through Variation Clusters
- FragGeneScan 1.16 – Predicting Genes in Short and Error-prone Reads
- FOG 1.0 / webFOG – A tool to Map Genomic Features on to Genes
- GeneCAT – Gene Co-expression Analysis Tool-box
- GO-At – Gene Function Prediction in Arabidopsis Thaliana
- GPX – Gene Phylogeny eXplorer
- Moara 1.0.6 – Extract & Normalize Gene and Protein Mentions
- GUILD – Genes Underlying Inheritance Linked Disorders framework
- CarGene 1.0 – Characterization of Sets of Genes based on Metabolic Pathways Analysis
- genoPlotR 0.8 – Plot Gene and Genome Maps
- GIGA 1.1.1 – Gene Tree Inference in the Genomic Age
- GenePro 2.5.2 – Visualization and Analysis of Protein and Gene Interaction Networks
- Rankgene 1.1 – Rank Genes from Expression data
- FastER 1.0 – Identification of Genes with Fast-evolving Regions in closely related Genomes
- MatchMiner Build137 – Batch-translation among many types of Gene and Protein Identifiers
- MCDGPA – Modularized Candidate Disease Genes Prioritization Algorithm
- HCGene 1.0.1 – Hierarchical Classification of Genes
- KaPPA-Average 1.0 – Convert Probe ID-based Gene Expression data to Gene ID-based Data
- sgp2 1.1 – Predict Genes by comparing Anonymous Genomic Sequences from two different Species
- Event-mapper 2.53 – Find Temporal on/off Switches shared by many Genes
- COGRIM – Clustering of Genes into Regulons using Integrated Modeling
- Scipio 1.4 – Uukaryotic Gene Identification
- GenRev 1.0.1 – Explore Functional Relevance of Genes in Molecular Networks
- COCO-CL – Identify Orthologous set of Genes.
- MAGprediction – Gene Allele Prediction Using Unphased SNP data
- Sub-GSE – Testing Gene Set Enrichment for Subset of Genes
- GoFish 1.11 – Find Genes with Combinations of Gene Ontology Attributes
- GeneSelector 1.0 – Find Small subset of Genes for Classification of Expression data
- GCUA 1.2 – Evaluate Codon Usage in a set of Genes
- KASKAD 1.0.1 – Temporal Information Extraction about Genes from Text Corpora
- geneid 1.4.4 – Predict Genes in Anonymous Genomic Sequences
- BioMyn – Mining Gene and Protein Knowledge
- PSbR – Test Evolution and Conservation of Common Clusters of Genes
- ProbeLynx 1.2.2 – Update the Association of Microarray Probes to Genes
- GeneTree 1.3 – Compare Gene and Species Trees
- Orphelia – Predict Genes in Metagenomic Sequencing Reads
- MapMaker 3 – Genetic Linkage Analysis & Mapping Genes Complex Traits
- DNA – Puzzle Game of Gene
- Biomorphs 3.5 – Demonstrate Limitations of Selection Acting on Genes
- TOUR OF THE BASICS – Introduce DNA & Genes
- BootFam – Define Gene/Protein Families
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