GBNet (Gibbs sampler enhanced Bayesian Network) is designed to search for enriched sequence constraints such as a motif pair and positional preference of motif in a group of co-regulated genes.
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Li Shen, Jie Liu, Wei Wang,
GBNet: Deciphering regulatory rules in the co-regulated genes using a Gibbs sampler enhanced Bayesian network approach,
BMC Bioinformatics 2008, 9:395.