Galaxy 18.09 – Evolutionary and Data Processing Module Development

Galaxy 18.09

:: DESCRIPTION

Galaxy is an open, web-based platform for data intensive biomedical research. Whether on the free public server or your own instance, you can perform, reproduce, and share complete analyses.

::DEVELOPER

Galaxy Team

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows /  Mac OsX / Linux
  • Python

:: DOWNLOAD

 Galaxy

:: MORE INFORMATION

Citation

Genome Res. 2009 Nov;19(11):2144-53. Epub 2009 Oct 9.
Windshield splatter analysis with the Galaxy metagenomic pipeline.
Kosakovsky Pond S, Wadhawan S, Chiaromonte F, Ananda G, Chung WY, Taylor J, Nekrutenko A; Galaxy Team.

QMLGalaxyPortal 1.2.5 – A mobile QML app for interfacing with the Galaxy API

QMLGalaxyPortal 1.2.5

:: DESCRIPTION

QMLGalaxyPortal is quick and easy way to check the status of biomedical research on Galaxy and review your history.

::DEVELOPER

QMLGalaxyPortal team

:: SCREENSHOTS

QMLGalaxyPortal

:: REQUIREMENTS

  • iOS/ Android

:: DOWNLOAD

 QMLGalaxyPortal

:: MORE INFORMATION

Citation:

Galaxy Portal: Interacting with the Galaxy platform through mobile devices.
Børnich C, Grytten I, Hovig E, Paulsen J, Čech M, Sandve GK.
Bioinformatics. 2016 Jan 27. pii: btw042

BioBlend 0.6.1 – Python library for interacting with CloudMan and Galaxy‘s API

BioBlend 0.6.1

:: DESCRIPTION

BioBlend is a unified API in a high-level language (python) that wraps the functionality of Galaxy and CloudMan APIs.

::DEVELOPER

Enis Afgan

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/MacOsX/Linux
  • Python

:: DOWNLOAD

 BioBlend

:: MORE INFORMATION

Citation

Bioinformatics. 2013 Jul 1;29(13):1685-6. doi: 10.1093/bioinformatics/btt199. Epub 2013 Apr 28.
BioBlend: automating pipeline analyses within Galaxy and CloudMan.
Sloggett C1, Goonasekera N, Afgan E.

VirAmp – Galaxy-based Viral Genome Assembly pipeline

VirAmp

:: DESCRIPTION

VirAmp is a web-based semi-de novo fast virus genome assembly pipeline designed for extremely high coverage NGS data. VirAmp is a collection of existing tools, combined into a single Galaxy interface. Users without further computational knowledge can easily operate the pipeline.

::DEVELOPER

Szpara Laboratory

:: SCREENSHOTS

N/A

: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

VirAmp: a galaxy-based viral genome assembly pipeline.
Wan Y, Renner DW, Albert I, Szpara ML.
Gigascience. 2015 Apr 28;4:19. doi: 10.1186/s13742-015-0060-y.

ballaxy – Galaxy-based workflow toolkit for Structural Bioinformatics

ballaxy

:: DESCRIPTION

ballaxy is a workflow framework for structure based computational biology based on the Galaxy workflow engine.

::DEVELOPER

BALL Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux /  MacOsX / Windows
  • Web Server
  • C++ Comipiler

:: DOWNLOAD

 ballaxy

:: MORE INFORMATION

Citation:

ballaxy: web services for structural bioinformatics.
Hildebrandt AK, Stöckel D, Fischer NM, de la Garza L, Krüger J, Nickels S, Röttig M, Schärfe C, Schumann M, Thiel P, Lenhof HP, Kohlbacher O, Hildebrandt A.
Bioinformatics. 2014 Sep 2. pii: btu574.