Tag: Fragmentation

PeptideART 2.0 – Peptide Fragmentation Spectrum Predictor

PeptideART 2.0

:: DESCRIPTION

PeptideART is a software package that predicts peptide fragmentation spectra in an LC-MS/MS experiment for CID instruments .

::DEVELOPER

Predrag Radivojac

:: SCREENSHOTS

PeptideART

:: REQUIREMENTS

  • Windows / Linux/ MacOsX
  • Java

:: DOWNLOAD

  PeptideART

:: MORE INFORMATION

Citation

Anal Chem. 2011 Feb 1;83(3):790-6. doi: 10.1021/ac102272r. Epub 2010 Dec 22.
On the accuracy and limits of peptide fragmentation spectrum prediction.
Li S1, Arnold RJ, Tang H, Radivojac P.

Pac Symp Biocomput. 2006:219-30.
A machine learning approach to predicting peptide fragmentation spectra.
Arnold RJ1, Jayasankar N, Aggarwal D, Tang H, Radivojac P.

FragMixer 201409 – Automated Phosphopeptide Identification using multiple MS/MS Fragmentation Modes

FragMixer 201409

:: DESCRIPTION

FragMixer is a tool to better identify phosphopeptides using multiple MS/MS fragmentation modes.

::DEVELOPER

Systems Biology Lab, Institut Pasteur, Paris

:: SCREENSHOTS

FragMixer

:: REQUIREMENTS

  • Linux/ Windows/ MacOsX
  • Java

:: DOWNLOAD

 FragMixer

:: MORE INFORMATION

Citation

J Proteome Res. 2012 Dec 7;11(12):5695-703. doi: 10.1021/pr300507j. Epub 2012 Nov 7.
Automated phosphopeptide identification using multiple MS/MS fragmentation modes.
Vandenbogaert M1, Hourdel V, Jardin-Mathé O, Bigeard J, Bonhomme L, Legros V, Hirt H, Schwikowski B, Pflieger D.