FINDSITELHM is a homology modeling approach to flexible ligand docking. It uses a collection of common molecule substructures derived from evolutionarily related templates as the reference compounds in similarity-based ligand binding pose prediction. It also provides a simple scoring function to rank the docked compounds.
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Brylinski M and Skolnick J (2009) FINDSITE(LHM): a threading-based approach to ligand homology modeling. PLoS Comput Biol 5:e1000405