Editor
- Chromas Lite 2.1.1 / Chromas 2.4.1 / ChromasPro 1.7.5 – Sequence & Chromatogram Editor
- BioEdit 7.2.0 – Biological Sequence Alignment Editor
- OBO-Edit 2.3b5 – Ontology Editor for Biologists
- JChemPaint 3.3-1210 – Editor for 2D Molecular Structures
- ChiBE 2.0 – Chisio BioPAX Editor
- Edinburgh Pathway Editor 3.0a13 – Visual Editor for Systems Biology
- SBMLeditor 2.0-b1 – SBML File Editor
- Accelrys JDraw 1.1 – Chemical Structure Editor Applet for Web
- Garlic 1.6 – Free Molecular Viewer and Editor
- Apollo 1.11.8 – Genome Annotation Viewer & Editor
- GenomeView 2020 – Next-generation Genome Browser and Editor
- Jalview 2.8 – Multiple Alignment Editor
- Avogadro 1.1.0 – Molecule Editor & Visualizer
- NGSView 0.91 – Editor for Next-generation Sequencing data
- CINEMA 5 0.2.1-BETA – Sequence Alignment Editor
- Dunnart 2.0 – Constraint-Based Diagram Editor
- ApE 2.0.44 – A Plasmid Editor
- MASE 4.1 – Multiple Aligned Sequence Editor
- Ridom TraceEdit 1.1.0 – Free DNA Trace Editor
- ConStruct 3.2.5 – RNA Alignment Editor and Consensus Structure Prediction Tool
- GeneDoc 2.7.0 – Multiple Sequence Alignment Editor
- Align 200807 – DNA Sequence Alignment Editor
- Baobab 3.31 – Editor for Large Phylogenetic Trees
- CDTree 3.1 – Protein Domain Hierarchy Viewer and Editor
- Squint 1.02 – Multiple Sequence Alignment Editor
- Se-Al 2.0a11 – Manual Sequence Alignment Editor
- NDE 0.5.0 – NEXUS Data Editor
- Vised 1.1 – Sequence Editor / Display Software
- VHMPT – Viewer & Editor for Helical Membrane Protein Topologies
- DNA Master 5.22.1 – DNA sequence editor and analysis package
- PDB Editor 090203 – PDB (Protein Data Bank) File Editor
- StrukEd – Editor for Molecules & 3D Viewer
- MCDL 20070701 – Java Molecular Viewer/Editor for Chemical Structures
- SeqPup 0.9 – Biosequence Editor
- QuickAlign 1.03 – Alignment editor for Macinthosh computers
- TreeGraph 2.0.47 – Graphical Editor for Phylogenetic Trees
- PhyDE 0.9971 – Phylogenetic Data Editor
- Base-By-Base – Genome Pairwise & Multiple Alignment Editor
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