iMotifs 0.2.5 – Sequence Motif Editor for the Mac

iMotifs 0.2.5

:: DESCRIPTION

iMotifs is a graphical motif analysis environment for the Apple Mac computers (Leopard or later).It allows visualization of annotated sequence motifs and scored motif hits in sequences.

::DEVELOPER

iMotifs team

:: SCREENSHOTS

iMotifs

:: REQUIREMENTS

  • Mac

:: DOWNLOAD

 iMotifs

:: MORE INFORMATION

Citation

Bioinformatics. 2010 Mar 15;26(6):843-4. doi: 10.1093/bioinformatics/btq026. Epub 2010 Jan 26.
iMotifs: an integrated sequence motif visualization and analysis environment.
Piipari M1, Down TA, Saini H, Enright A, Hubbard TJ.

GenomeView N42 – Next-generation Genome Browser and Editor

GenomeView N42

:: DESCRIPTION

GenomeView is a next-generation stand-alone genome browser and editor.It provides interactive visualization of sequences, annotation, multiple alignments, syntenic mappings, short read alignments and more. Many standard file formats are supported and new functionality can be added using a plugin system.

:DEVELOPER

Van de Peer Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / MacOsX /  Linux
  • Java

:: DOWNLOAD

 GenomeView

:: MORE INFORMATION

Citation

GenomeView: a next-generation genome browser
Thomas Abeel; Thomas Van Parys; Yvan Saeys; James Galagan; Yves Van de Peer
Nucleic Acids Research 2011; doi: 10.1093/nar/gkr995

Dunnart 2.0 – Constraint-Based Diagram Editor

Dunnart 2.0

:: DESCRIPTION

Dunnart is a prototype constraint-based diagram editor. It includes standard diagram editing capabilities, as well as advanced features such as constraint-based geometric placement tools (alignment, distribution, separation, non-overlap, and page containment), automatic object-avoiding poly-line connector routing, and continuous network layout.

::DEVELOPER

IALab: Immersive Analytics Lab

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 Dunnart

:: MORE INFORMATION

Citation

Tim Dwyer, Kim Marriott, and Michael Wybrow.
Dunnart: A constraint-based network diagram authoring tool.
In Proceedings of 16th International Symposium on Graph Drawing (GD’08), LNCS 5417, pages 420–431. Springer-Verlag, 2009

Jalview 2.11.0 – Multiple Alignment Editor

Jalview 2.11.0

:: DESCRIPTION

Jalview is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server.

::DEVELOPER

The Barton Group

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / Mac OsX
  • Java

:: DOWNLOAD

Jalview

:: MORE INFORMATION

Citation:

Waterhouse, A.M., Procter, J.B., Martin, D.M.A, Clamp, M. and Barton, G. J. (2009)
Jalview Version 2 – a multiple sequence alignment editor and analysis workbench
Bioinformatics 25 (9) 1189-1191

Baobab 3.31 – Editor for Large Phylogenetic Trees

Baobab 3.31

:: DESCRIPTION

Baobab is an editor for large phylogenetic trees written in Java. It allows you to create and/or modify a tree interactively, adding/(re)moving branches and nodes, changing leave names, setting parameters. Baobab focuses on edition, not representation and display that are only used as a tool to make edition easier.

::DEVELOPER

Dr Julien Y. Dutheil

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows / MacOsX / Linux
  • Java

:: DOWNLOAD

Baobab

:: MORE INFORMATION

Citation:

Dutheil J, Galtier N.
BAOBAB: a Java editor for large phylogenetic trees.
Bioinformatics. 2002 Jun;18(6):892-3.

PhyDE2 0.2.0 – Phylogenetic Data Editor

PhyDE2 0.2.0

:: DESCRIPTION

PhyDE (Phylogenetic Data Editor) is a system-independent editor for DNA and amino acid sequence alignments, designed to assist anybody interested in phylogenetic or other comparative analyses of sequence data.

::DEVELOPER

BioInfWeb projects

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / Mac OsX
  • Java

:: DOWNLOAD

PhyDE

:: MORE INFORMATION

TreeGraph 2.15.0 – Graphical Editor for Phylogenetic Trees

TreeGraph 2.15.0

:: DESCRIPTION

TreeGraph is a graphical editor for phylogenetic trees which allows you to apply lots of graphical formats to the elements of your tree. Moreover, it supports several (visible or invisible) annotations (e.g. support values) for every branch or node. These annotations can be imported from Nexus tree files or text files containing data in a table (e.g. exported from a spreadsheet program).

::DEVELOPER

BioInfWeb projects,

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows / Mac OsX
  • Java

:: DOWNLOAD

TreeGraph

:: MORE INFORMATION

Citation

Stöver B C, Müller K F
TreeGraph 2: Combining and visualizing evidence from different phylogenetic analyses
BMC Bioinformatics 2010, 11:7

BioEdit 7.2.5 – Biological Sequence Alignment Editor

BioEdit 7.2.5

:: DESCRIPTION

BioEdit is a biological sequence alignment editor written for Windows 95/98/NT/2000/XP.  An intuitive multiple document interface with convenient features  makes alignment and manipulation  of sequences relatively easy on your desktop computer.    Several sequence manipulation and analysis options and links to external anaylsis programs facilitate a working environment which allows you to view and manipulate sequences with simple point-and-click operations.

::DEVELOPER

Tom Hall

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

BioEdit

:: MORE INFORMATION

Chromas 2.6.6 / ChromasPro 2.1.8 – Sequence & Chromatogram Editor

Chromas 2.6.6 / ChromasPro 2.1.8

:: DESCRIPTION

Chromas is a low-cost chromatogram file editor with search, vector sequence detection and multi-format sequence export functions, plus powerful batch processing.

ChromasPro is a low-cost sequence and chromatogram editor with search, vector sequence detection, contiguous sequence assembly and restriction and open-reading-frame mapping.

::DEVELOPER

Technelysium Pty Ltd

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

Chromas ,  ChromasPro

:: MORE INFORMATION