KInfer – Calibration of Dynamic Models of Biological Systems

KInfer

:: DESCRIPTION

KInfer generates a generalized mass action model from the chemical equations of reactions and an estimation of the structural parameters of these reactions

::DEVELOPER

The Microsoft Research – University of Trento Centre for Computational and Systems Biology

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / Linux/ MacOsX
  • JRE

:: DOWNLOAD

 KInfer

:: MORE INFORMATION

Citation

Eur Biophys J. 2010 May;39(6):1019-39. doi: 10.1007/s00249-009-0520-3. Epub 2009 Aug 11.
Calibration of dynamic models of biological systems with KInfer.
Lecca P1, Palmisano A, Ihekwaba A, Priami C.

MoSeC 1.2 – Conversion of Dynamic Models of Complex Genetic Circuits into Nucleotide Sequences Ready for Synthesising

MoSeC 1.2

:: DESCRIPTION

MoSeC (Model to Sequence Converter) is a Java application for synthetic biology design that takes a model annotated with the DNA sequence information of genetic elements and converts it into a DNA sequence.

::DEVELOPER

Centre for Synthetic Biology and Bioexploitation

:: SCREENSHOTS

MoSeC

:: REQUIREMENTS

  • Linux / Windows/ MacOsX
  • JRE

:: DOWNLOAD

 MoSeC

:: MORE INFORMATION

Citation

Bioinformatics. 2011 Apr 1;27(7):973-9. doi: 10.1093/bioinformatics/btr048. Epub 2011 Feb 4.
Model annotation for synthetic biology: automating model to nucleotide sequence conversion.
Misirli G, Hallinan JS, Yu T, Lawson JR, Wimalaratne SM, Cooling MT, Wipat A.