DSD 20160312 – DNA Strand Displacement Simulator

DSD 20160312

:: DESCRIPTION

DSD is a new programming language for designing and simulating DNA circuits in which strand displacement is the main computational mechanism.

::DEVELOPER

Matthew Lakin,  Filippo Polo, Simon Youssef, Kathryn Gray, Rasmus Petersen, Luca Cardelliand Andrew Phillips.

:: SCREENSHOTS

dsd

:: REQUIREMENTS

:: DOWNLOAD

 DSD

:: MORE INFORMATION

Citation

Visual DSD: a design and analysis tool for DNA strand displacement systems.
Lakin MR, Youssef S, Polo F, Emmott S, Phillips A.
Bioinformatics. 2011 Nov 15;27(22):3211-3. doi: 10.1093/bioinformatics/btr543

Gener 1.2 – Chemical Controllers based on DNA Strand Displacement

Gener 1.2

:: DESCRIPTION

Gener is a tool for performing reductions on DNA-strands based on a strand-displacement algebra.

::DEVELOPER

The Microsoft Research – University of Trento Centre for Computational and Systems Biology

:: SCREENSHOTS

Gener

:: REQUIREMENTS

  • Windows
  • .NET Framework

:: DOWNLOAD

 Gener

:: MORE INFORMATION

Citation

Gener: A minimal programming module for chemical controllers based on DNA strand displacement.
Kahramanoğullari O, Cardelli L.
Bioinformatics. 2015 May 7. pii: btv286