DNA Sequence
- DNA Dragon 1.5.6 build1 – DNA Sequence Contig Assembler Software
- N-score – Predict Nucleosome Positions from DNA Sequence information
- WCD 0.6.3 – DNA Sequence Clustering tool
- CodonCode Aligner 4.1.1 – DNA Sequence Assembly & Alignment
- LASTZ 1.03.34 – Program for Aligning DNA Sequences
- RepeatMasker 4.0.1 – Screen DNA Sequences for Interspersed Repeats and Low Complexity DNA Sequences
- Possum – Detect Cis-elements in DNA Sequences
- e-PCR 2.3.12 – Search DNA Sequences for Sequence Tagged Sites
- Pepline 2.0.1 – Mapping of MS/MS data to Genomic DNA Sequences
- ACT 12.0.0 – Display Pairwise Comparisons between DNA Sequences
- SPADS 1.1 – Spatial and Population Analysis of DNA Sequences
- DECIPHER 1.4.0 – Decipher & Manage DNA Sequences
- UniDPlot 1.2.2 – Detect Weak Similarities between two DNA sequences
- OligoCounter 0.64 – Count Overrepresented 8-14bp Oligonucleotides in DNA Sequences
- nhPhyML – Compute Phylogenetic Trees under non Homogeneous model of DNA sequence Evolution
- SRF 1.1 – Find Repeats through an analysis of the power Spectrum of a given DNA Sequence
- DNA DABBLER – DNA Sequence Database
- JESAM 0.8.1 – Parallel Processing DNA Sequence Comparison and Clustering
- Miropeats 2.02 – Display DNA Sequence Similarity Information Graphically
- PaCE – Parallel software for Clustering DNA sequences
- Dragon PolyA Spotter 1.1 – Predictor of poly(A) motifs within Human Genomic DNA sequences
- PROMO – Detection of Putative Transcription Factor Binding Sites (TFBS) in DNA sequences
- biomc2 1.9 – Detect recombination in DNA Sequence Alignments
- AhoPro – Seach for Overrepresentation of Given motifs in DNA sequences, P-value calculation
- Voting 4 – Discover Patterns, Motif, in a set of DNA sequences
- PhyloGibbs – Discover Regulatory Sites in a Collection of DNA sequences
- Clover 20120216 – Find Overrepresented Motifs in DNA Sequences
- seqRFLP 1.0.1 – Predicting RFLP from DNA sequences
- TD 2.0 – Computation of the Transformation Distance for a set of DNA sequences
- ACANA – Accurate and Consistent Alignment Tool for DNA sequences
- TAMO 20120321 – Analyze Transcriptional Regulation using DNA-sequence Motifs
- Parat 0.9.1 – Estimates Site Specific Substitution Rates from a set of DNA sequences
- Shuffle 1.02 – Shuffle a DNA Sequence Any Number of Times
- DNAzip – DNA Sequence Compression using a Reference Genome
- EulerAlign 0.9 – Alignment of DNA sequences using Eulerian graphs
- GenCompress 20080118 / GenDecompress – Compression / Decompression for DNA sequences
- SequenceViewer 20100606 – Viewing and Comparing DNA Sequences
- Crann 1.04 – Detect Adaptive Evolution in Protein-coding DNA Sequences
- RHOM – Research of HOMogeneous regions in DNA sequences
- mreps 2.5 – Detect Tandem Repeats in DNA sequences
- Staden 2.0.0b9 – DNA Sequence Assembly , Editing and Analysis
- XMatchView 0.2 – Visualize DNA Sequence Alignments.
- RecPars – Parsimony Analysis of DNA Sequences
- MotifOrganizer 0.1 Beta – Cluster large sets of DNA sequence motifs to identify common patterns
- MotifRegressor – Find DNA Sequence Motifs
- TOADS – TOpologies in Alignments of DNA Sequences
- Sigma 2.0 BETA – Non-coding DNA Sequence Alignment
- 4Peaks 1.7 – View & Edit DNA Sequence Trace Files
- Vector NTI Viewer 4.0.1 – Read DNA Sequence Data from GenBank, EMBL or FASTA files
- Ameliorator 1.0 – Calculate Amelioration Times for DNA Sequence Evolution
- DNA Master 5.22.1 – DNA sequence editor and analysis package
- DNA Counter 1.0.2 – Caculate Proportions of A,C G, T ,CG, AT in DNA Sequence
- DNA for Windows 2.51 – DNA Sequence Editing & Analysis Program
- VariScan 2.0.3 – Analysis of DNA Sequence Polymorphisms at the Whole Genome-scale
- DnaSP 5.10.01 – Analysis of Nucleotide Polymorphism from Aligned DNA Sequence Data
- Vocabulon 1.0 – Identification of Conserved Words in DNA Sequence
- DNA2ABC 1.0.1 – Turn DNA Sequences into Musical Sequences
- Binary – DNA Sequence Screen Saver
- ProteinMusic 1.1 – Convert DNA Sequences into Music
- TSDA 1.0 – Alignment tool to Analyse Recombinant DNA Sequences
- IMMpractical 1.0 – Markov Chain Models for Analysis of DNA Sequences
- Excap 2.0 – Choose Informative Markers in DNA Sequences
- MRSfinder 1.0 – Find MAR Recognition Signature in DNA Sequence
- Lucy 2.19p-R8 – DNA Sequence Quality & Vector Trimming
- YMF 3.0 /FindExplanators 1.1.3 – Finds Short Motifs in DNA Sequences
- ROVER 20050711 – Find Relatively Overrepresented Motifs in DNA Sequences
- Cister – Find Motif Clusters in DNA Sequences
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