DNA
- BRB-ArrayTools 4.3.0 Beta3 – Visualization & Analysis of DNA Microarray Gene Expression Data
- Phred/Phrap/Consed 24.0 – DNA Sequence Assembler & Finishing Tools
- Jellyfish 1.1.10 – Counting of K-mers in DNA
- Unique – Find Sequences that are repeated once or a precise number of times in DNA
- Gibbs Motif Sampler 3.10 – Identify Motifs, Conserved Regions, in DNA or Protein Sequences
- FiToM 1.0 / xFITOM 1.03 / jFITOM 1.0 – Detection of Binding Sites in DNA or RNA Sequences
- GelQuest 3.1.7 – Analysis of DNA Fingerprints
- RDNAanalyzer – Secondary Structure Pprediction and Analyzing DNA
- StatAlign 2.1 – Bayesian Analysis of Protein, DNA and RNA Sequences
- Array-A-Lizer 1.03 – DNA Microarray Quality Analyzer
- tantan 13 – Find Cryptic Repeats in DNA, RNA, and Protein Sequences.
- GATK 2.3-9 – Analysis Tools for Next-generation DNA Sequencers
- PSTk-Classifier – Classify DNA using a Bayesian approach
- methylKit 0.5.6 – R package for DNA methylation analysis
- NeoCodon 1.0.1 – Play with DNA
- DNA/RNA/Protein and General Molecular Weight Calculator 1.0
- The Lazy Scientist 1.3 – DNA to Amino Acid / DNA Codon Table / E Coli Back Translate
- cutadapt 1.2.1 – Remove Adapter Sequences from DNA Sequencing reads
- nuScore – DNA Deformation Energy and Nucleosome-positioning Score Calculator
- BASTA – Bayesian Modeling of DNA copy number amplification data
- Poly 0.1.1 – Quantitative Analysis of Simple Sequence Repeats (SSRs) in DNA
- Sequencher 5.1 – DNA Sequence Assembly and Analysis
- DNASIZE – Computation of size of DNA and Protein Fragments from Their Electrophoretic Mobility
- iMolview 1.6 – iPhone, iPad and Android App for Browsing Protein, DNA & Drug Molecules in 3D
- nxCode 0.1 – DNA Barcode Designer and Decoder
- GraphiteLifeExplorer 20120731 – Model in 3D Assemblies of Proteins and DNA
- EpiHap 0.5 – Annotation on Sequence-associated DNA Methylation sites
- MPCBS 1.1.1 – Multi-platform segmentation for DNA copy number data
- CpGassoc 1.3 – Analysis of DNA Methylation Microarray data
- jMOTU 1.0.7 / Taxonerator 0.9 – Analysis of Large DNA Barcode Datasets
- BLAT 35 – Rapid mRNA/DNA & Cross-species Protein Alignments
- SEWAL 20100804 – Next Generation DNA Sequencing Analysis and Visualization
- GS De Novo Assembler – de novo DNA Sequence Assembly
- PatScan – Locate Patterns in DNA or Protein FASTA files
- RepeatScout 1.0.5 – Discover Repetitive Substrings in DNA
- GANN 2.0 – Machine Learning tool for the Detection of Conserved Features in DNA
- OMiMa – Identify Functional Motifs in DNA or Protein Sequences
- SIMULATOR 1.0 – Simulate DNA and Protein datasets with well-defined Insertion-deletion dynamics
- IQPNNI 3.3.2 – Reconstruct a Phylogenetic Tree based on DNA or Amino Acid Sequence data
- CoTrix 3.0 – Analysis of complex DNA Banding Patterns
- WH – Fit Speciation Model to DNA Sequence data sets
- R functions for cDNA array analysis – cDNA Microarray Analysis
- FunSiP 0.8.1b – Prediction of Functional Sites in DNA
- MUMmer 3.23 – Alignment of Large-scale DNA & Protein Sequences
- MultiRNAFold 2.0 – Secondary Structure Prediction of RNA/DNA
- Kinefold – RNA/DNA Folding Predictions
- ESTScan 3.03 – Detect Coding Regions in DNA/RNA Sequences
- PhyloGibbs-MP 2.0 – Motif Finder in Cis-regulatory Sequences of DNA
- BioconductorBuntu – Web-Based DNA Microarray Analysis Server
- BioSeqAnalyzer 1.0 – Analyze DNA and Protein Sequences
- Genamics Expression 1.1 – DNA and Protein Sequence Analysis
- DNASIS MAX 3.0 – Bioinformatics Software for DNA/RNA/Amino Acid Sequence Analysis
- Align 200807 – DNA Sequence Alignment Editor
- Dnatree 1.3 – DNA Phylogeny Teaching Program
- Translate.wdgt – DNA/Protein Conversions
- DNA – Puzzle Game of Gene
- Bio2MIDI 2.1 – Convert DNA or Protein Sequence to MIDI file
- TOUR OF THE BASICS – Introduce DNA & Genes
- ArtWonk 4.2 – DNA to MIDI Converter
- RNAView – Generates 2-dimensional Displays of RNA/DNA Secondary Structures
- Promoter 2.0 – Transcription Start Sites in Vertebrate DNA
- NetStart 1.0c – Translation Start in Vertebrate & A. Thaliana DNA
- NetGene2 2.42 – Intron Splice Sites in Human, C. Elegans & A. Thaliana DNA
- GraphDNA – DNA Composition Analyse Graphing
- GeneSplicer – Detecting Splice Sites in Eukaryotic Genomic DNA
- PutGaps Beta – DNA Gapped File from Amino Acid Alignment
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