DGEclust 20150607 – Hierarchical non-parametric Bayesian Clustering of Digital Expression data

DGEclust 20150607

:: DESCRIPTION

DGEclust is a program for clustering and differential expression analysis of expression data generated by next-generation sequencing assays, such as RNA-seq, CAGE and others.

::DEVELOPER

Computational Genomics Group, Department of Computer Science, University of Bristol, UK

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 DGEclust 

:: MORE INFORMATION

Citation:

Genome Biol. 2015 Feb 20;16:39. doi: 10.1186/s13059-015-0604-6.
DGEclust: differential expression analysis of clustered count data.
Vavoulis DV, Francescatto M, Heutink P, Gough J.

Dancer 1.1.1 – Digital Anatomical Reconstruction of Gene Expression data

Dancer 1.1.1

:: DESCRIPTION

DANCER (Digital Anatomy Constructor) is a program that can be used to reconstruct anatomical pictures. In general, it fills color into drawn shapes that collectively form a picture that represents the data. The main data source of this program is microarray data, but in situ hybridization-, Northern Blot-, Southern Blot- or any other data can be used. As a result, a picture (for example, a brain section from mouse) is produced where the shapes (for example, brain regions like the hypothalamus) are filled with color that corresponds to the gene expression level.

::DEVELOPER

Liisa Holm’s Bioinformatics Group

:: SCREENSHOTS

:: REQUIREMENTS

  • Windows

:: DOWNLOAD

  DANCER

:: MORE INFORMATION

 

Citation:

Kankainen M and Wong G. (2003)
DANCER: a program for digital anatomical reconstruction of gene expression data.
Nucleic Acids Res, 31, e132.