Baypass 2.2 – Genome-Wide Scan for Adaptive Differentiation and Association Analysis with Population-specific Covariables

Baypass 2.2

:: DESCRIPTION

The package BayPass is a population genomics software which is primarily aimed at identifying genetic markers subjected to selection and/or associated to population-specific covariates (e.g., environmental variables, quantitative or categorical phenotypic characteristics).

::DEVELOPER

Centre de Biologie et Gestion des Populations (CBGP)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl

:: DOWNLOAD

 Baypass

:: MORE INFORMATION

Citation

Genome-Wide Scan for Adaptive Divergence and Association with Population-Specific Covariates.
Gautier M.
Genetics. 2015 Dec;201(4):1555-79. doi: 10.1534/genetics.115.181453.

VirtualCytometry – Webserver for the Study of Immune Cell Differentiation using single-cell RNA sequencing data

VirtualCytometry

:: DESCRIPTION

VirtualCytometry is a webserver that provides computational platform for the study of immune cell differentiation using scRNA-seq data by enabling identification and validation of genes involved in immune cell differentiations via ‘Discovery Module’ and ‘Hypothesis Test Module’ respectively.

::DEVELOPER

Network Biomedicine Laboratory at Yonsei University, Korea

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web browser

:: DOWNLOAD

 NO

:: MORE INFORMATION

Citation

Bioinformatics. 2019 Aug 2. pii: btz610. doi: 10.1093/bioinformatics/btz610.
VirtualCytometry: a webserver for evaluating immune cell differentiation using single-cell RNA sequencing data.
Kim K, Yang S, Ha SJ, Lee I.

BEDASSLE 1-1 – Bayesian Estimation of Differentiation in Alleles by Spatial Structure and Local Ecology

BEDASSLE 1-1

:: DESCRIPTION

BEDASSLE estimates the relative contributions of pairwise geographic distance and pairwise ecological distance to patterns of genetic variation.

::DEVELOPER

Gideon Bradburd  with Peter Ralph and Graham Coop

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 BEDASSLE

:: MORE INFORMATION

Citation

Evolution. 2013 Nov;67(11):3258-73. doi: 10.1111/evo.12193.
Disentangling the effects of geographic and ecological isolation on genetic differentiation.
Bradburd GS, Ralph PL, Coop GM.