Detection
- HHblits 2.0.16 – Homology Detection by Iterative HMM-HMM Comparison
- Fastbreak – Structural Variant Detection in Genomic data
- FiToM 1.0 / xFITOM 1.03 / jFITOM 1.0 – Detection of Binding Sites in DNA or RNA Sequences
- RDP 4.19 Beta – Recombination Detection Program
- RNASeqBias 1.0 – Bias Detection and Correction in RNA-Sequencing Data
- EGID 1.0 – Improved Genomic Island Detection in Genomic Sequences
- NucleoFinder 1.0 – Detection of Nucleosome Positions
- FounderTracker – Genome-wide Detection of Founder Mutations in Cancer using Dense Tumor SNP Profiles
- BetAware – Beta-Barrel Detection and Topology Prediction
- OmegaPlus 2.2.1 – Detection of Selective Wweeps in Whole-genome Datasets
- SubSeqer – Detection and Identification of Repetitive Elements in low-complexity Sequences
- MotifSuite 201302 – Probabilistic Motif Detection
- ARR 1.0 – Adaptive Ridge Regression for Rare Variant Detection
- GTG – Remote Homology Detection and Fold Assignment
- COMA 1.10 – Detection of Distant Evolutionary Relationships
- PDEXK – Server for Detection of new Protein Families from the PD-(D/E)XK Superfamily
- is-rINDEL – in silico Regulatory INDEL Detection
- is-rSNP – in silico Regulatory SNP detection
- FUGUE 20090924 – Protein Structure Prediction using Remote Homology Detection
- LFM-Pro – Detection of Significant Local Structural Sites in Proteins
- TMDET 2.0 – Detection of Transmembrane Regions of Membrane Protein
- rSW-seq – Detection of Copy Number Alterations in Deep Sequencing data
- MSPocket 1.1 – Detection and Graphical Analysis of Protein Surface Pockets
- DIAL – 3-Dimensional RNA Structural Alignment and Motif Detection
- BEADS 1.1.13 – Spot Detection on 2-D Gel Images
- NovelSeq 1.0.2 – Novel Sequence Insertions Detection
- VariationHunter 0.04 – Structural Variation Detection
- Epitopia – Detection of Immunogenic Regions in Protein Sequences
- traitRate 1.1 – Detection of Trait-dependent Shifts in the Rate of Sequence Evolution
- Pindel 0.2.4t – INDEL (insertions and deletions) Detection
- PolyScan 3.0 – Automatic Indel and SNP Detection
- Magnolya 0.13 – Detection of Copy Number Variation
- ERDS 1.06.04 – Detection of CNVs on Human Genomes
- Varclus – Detection of Positive Selection in Genes and Genomes through Variation Clusters
- TrueSight 0.06 – Self-training Algorithm for Splice Junction Detection using RNA-seq
- polyadq – Detection of Human Polyadenylation Signals
- MCdet – Detection of Functional Residues
- Tool for Biomedical Image Processing & Detection of Cancer using ANN
- PROMO – Detection of Putative Transcription Factor Binding Sites (TFBS) in DNA sequences
- Proteinortho 4.26 – Orthology Detection Tool
- DualBrothers 1.1 – Recombination Detection Software
- imappingfamily – QTL Detection in a Population with Family Structure
- imapping – Likelihood Ratio Test process for QTL Detection
- MDL 1.0 – Minimum Description Length for the detection of Phylogenetics Breakpoints
- TURNIP 1.3 – Detection of partial SNPs
- QuantiSNP 2.3 – Copy Number Variation (CNV) Detection
- FadE 0.0.2 – DNA Methylation Detection
- LCD – Local Coherence Detection
- DetectiV 1.1 – Analysis of Pathogen Detection Microarray data
- REPET 2.0 – Detection, Annotation and Analysis of Repeats in Genomic Sequences
- FRED 1.0 – Framework for T-cell Epitope Detection
- ASP 0.3 – Accurate Splice Site Detection
- PASSion 1.2.1 – Pattern Growth algorithm based Pileline for Splice Site Detection in Paired-end RNA-Seq data
- UCHIME 4.2.40 – Chimeric Sequences Detection
- PatSearch – Detection of Patterns and Structural Motifs in Nucleotide Sequences
- SADMAMA 20110410 – Motif Scanning and Detection of Significant Variation
- Sircah 1.0 – Detection and Visualization of Alternative Transcripts
- OMWSA – Detection of DNA repeats using moving window Spectral Analysis
- GANN 2.0 – Machine Learning tool for the Detection of Conserved Features in DNA
- SearchRepeats – Detection of Exact Repeats by a Compression Algorithm
- ModuleDigger – An Itemset Mining framework for the Detection of Cis-regulatory Modules
- SPSSQTL 1.0 – Statistical Power and Sample Size for QTL Detection
- MEDUSA – Motif Element Detection Using Sequence Agglomeration
- GPCRHMM – GPCR detection method
- sequenceLDhot – Hotspot Detection
- ShortFuse 0.2 – Gene Fusion Detection using Ambiguously Mapping RNA-Seq Read Pairs
- PennCNV 201106 – Copy Number Variation detection
- SNPdetector 20051014- Sensitive and Accurate SNP Detection
- MitoDis – Detection of Mitochondrial DNA mutation Involvement in Diseases
- Prest-plus 4.09 – Detection of Misspecified Relationships in Pedigrees
- TFdiff 0.4 – Detection of Differential Gene Expression Factors
- Polymorfind 0.1 – SNPs and Indels Detection
- Framedp 1.20 – Sensitive Peptide Detection on Noisy Matured Sequences
- SPLITS 1.1 / SPLITSX – tRNA Detection in Genome Sequence
- FANMOD 20061223 – Fast Network Motif Detection.
- Darn 1.0 – Non-protein-coding RNA Detection
- Tracker 2.0 – Footprint Detection and Alignment Consistency Determination
- SKIPPY 1.3 – Detection of Exonic Variants that Modulate Splicing
- miRanda 201008- microRNA Target Detection Software
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