Reaper 16-098 – Demultiplexing, Trimming and Filtering Short Read Sequencing data

Reaper 16-098

:: DESCRIPTION

Reaper is a program for demultiplexing, trimming and filtering short read sequencing data. It is intended to be suitable for dealing with a wide range of sequencing protocols, and will be updated to support new protocols where the current set of features does not suffice

::DEVELOPER

Stijn van Dongen

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows / MacOsX /  Linux
  • C Compiler

:: DOWNLOAD

 Reaper

:: MORE INFORMATION

Bayexer – Demultiplexing Tool for Illumina sequencers

Bayexer

:: DESCRIPTION

Bayexer (Bayesian demultiplexing) is a fast and accurate tool for demultiplexing reads generated by Illumina sequencers.

::DEVELOPER

Haisi Yi

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • Perl
:: DOWNLOAD

 Bayexer

:: MORE INFORMATION

Citation:

Bayexer: an accurate and fast Bayesian Demultiplexer for Illumina sequences.
Yi H, Li Z, Li T, Zhao J.
Bioinformatics. 2015 Aug 26. pii: btv501.

GBSX – Experimental Design and Demultiplexing Genotyping by Sequencing Experiments

GBSX 1.0

:: DESCRIPTION

GBSX is a package of tools to first aid in experimental design, including choice of enzymes and barcode design. Secondly, it provides a first analysis step to demultiplex samples using in-line barcodes, providing fastq files that can easily be plugged into existing variant analysis pipelines.

::DEVELOPER

GBSX team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux/MacOsX
  • Perl
  • Java

 GBSX

:: MORE INFORMATION

Citation

GBSX: a toolkit for experimental design and demultiplexing genotyping by sequencing experiments.
Herten K, Hestand MS, Vermeesch JR, Van Houdt JK.
BMC Bioinformatics. 2015 Mar 6;16(1):73.

deML – Maximum Likelihood Demultiplexing for NGS data

deML

:: DESCRIPTION

deML is a program for maximum likelihood demultiplexing of next-generation sequencing data.

::DEVELOPER

Department of Genetics / Bioinformatics Group, Max Planck Institute for Evolutionary Anthropology, Leipzig

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux
  • C++ compiler

:: DOWNLOAD

 deML

:: MORE INFORMATION

Citation

deML: Robust demultiplexing of Illumina sequences using a likelihood-based approach.
Renaud G, Stenzel U, Maricic T, Wiebe V, Kelso J.
Bioinformatics. 2014 Oct 30. pii: btu719.

TagGD – DNA Tag Generation and Demultiplexing

TagGD

:: DESCRIPTION

TagGD (DNA-based Tag Generator and Demultiplexor), a fully-customisable, fast and accurate software package that can generate thousands of barcodes satisfying user-defined constraints and can guarantee full demultiplexing accuracy.

::DEVELOPER

Pelin Akan (Phone: 0852481452)

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX/Windows

:: DOWNLOAD

  TagGD

:: MORE INFORMATION

Citation

PLoS One. 2013;8(3):e57521. doi: 10.1371/journal.pone.0057521. Epub 2013 Mar 4.
TagGD: fast and accurate software for DNA Tag generation and demultiplexing.
Costea PI, Lundeberg J, Akan P.