GACT – Genome Build and Allele Definition Conversion Tool

GACT

:: DESCRIPTION

GACT predicts and inter-converts between any of the common SNP allele definitions and between the major genome builds.

::DEVELOPER

Li Laboratory of Human Genetics and Genomics

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux

:: DOWNLOAD

 GACT

:: MORE INFORMATION

Citation

BMC Genomics. 2014 Jul 19;15:610. doi: 10.1186/1471-2164-15-610.
GACT: a Genome build and Allele definition Conversion Tool for SNP imputation and meta-analysis in genetic association studies.
Sulovari A, Li D

Genbank_to_Fasta 1.1 – Genbank/EMBL to FASTA Conversion Tool

Genbank_to_Fasta 1.1

:: DESCRIPTION

Genbank_to_Fasta is designed to accept a GenBank or EMBL format file, and convert it to a FASTA file. You have control over what kind of sequence gets extracted, and how the header line is written. Select a GenBank or EMBL format file to upload containing a feature table. Select the file format. Choose the delimiter characters that will separate the qualifiers from one another in the header line. Select whether to extract translated amino acid sequences, DNA sequence for each feature, or the entire DNA sequence of the whole record. To choose how your header line appears, designate the names of the qualifiers, one per field, in the order that you want them to appear in the FASTA header line.

::DEVELOPER

the Rocap lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux/MacOsX / Windows
  • Python

:: DOWNLOAD

 Genbank_to_Fasta

:: MORE INFORMATION

Vect 1.01 – Visual Extraction & Conversion Tool

Vect 1.01

:: DESCRIPTION

Vect (Visual Extraction & Conversion Tool) essentially is a visual extraction conversion program that provides biomedical researches with minimal computer programming background a way to generate data extraction and conversion programs. Vect provides a convenient graphical user interface that allows using common point and click methods to extract and arrange data in the way that is useful to their purposes and then provides the computer program to generate such results on other documents with the same formatting. Vect can be used with virtually any text format generated from computational technologies, making Vect a powerful tool for biomedical scientists.

::DEVELOPER

Complex Computation Laboratory ,Iowa State University

:: SCREENSHOTS

:: REQUIREMENTS

  • Linux / Windows /Mac OsX
  • Perl

:: DOWNLOAD

Registration First; Vect

:: MORE INFORMATION

Citation

VECT: an automatic visual Perl programming tool for nonprogrammers
Hui-Hsien Chou
BioTechniques Vol. 38, No. 4: pp 615-621 (Apr 2005)