:: DESCRIPTION
ConstraintChecker is a python script that tests satisfiability/consistency with a species tree of a set of orthologies/paralogies/undecided.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation
Manuel Lafond and Nadia El-Mabrouk
“Orthology and Paralogy Constraints: Satisfiability and Consistency”
RECOMB-CG 2014 paper (accepted)
:: DESCRIPTION
PCMA constructs a multiple sequence alignment given a set of protein sequences.
::DEVELOPER
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
J.Pei, R.I.Sadreyev, and N.V.Grishin (2003)
“PCMA: Fast and Accurate Multiple Sequence Alignment Based on Profile Consistency“.
Bioinformatics 19(3): 427-428.
:: DESCRIPTION
CBA (Consistency Based Alignment) builds multiple structure alignments from pairwise superpositions using consistency as a driving force.The software harnesses the information contained within regions that are consistently aligned among a set of pairwise superpositions in order to realign pairs of proteins through both global and local refinement methods. It then constructs a multiple alignment that is maximally consistent with the improved pairwise alignments.
::DEVELOPER
The Brutlag Bioinformatics Group
:: SCREENSHOTS
N/A
:: REQUIREMENTS
:: DOWNLOAD
:: MORE INFORMATION
Citation:
Jessica Ebert and Douglas Brutlag*
Development and validation of a consistency based multiple structure alignment algorithm
Bioinformatics (2006) 22 (9): 1080-1087
