Comparison
- HHsearch 2.0.16 – Protein Homology Detection by HMM–HMM Comparison
- HHblits 2.0.16 – Homology Detection by Iterative HMM-HMM Comparison
- Vienna RNA Package 2.1.1 – RNA Secondary Structure Prediction & Comparison
- RadCon 1.1.6 – Phylogenetic Tree Consensus & Comparison Program
- NCT 1.1.0 – The Network Comparison Toolkit
- FTProd – Binding Site Comparison across Multiple Structures
- varLD 1.0 – Comparison of Variation in Linkage Disequilibrium between Population
- dali_sp – Script for DaliLite to perform Serial Structure Comparison
- Rahnuma 1.1.1 – Prediction and Analysis of Metabolic Pathways and Comparison of Metabolic Networks
- SeqDoC 1.2 – Chromatogram Comparisons
- MANTiS 1.1 – Phylogenetic Framework for Multi-species Genome Comparisons
- HHomp – Homology Detection of OMPs by HMM-HMM Comparison
- JESAM 0.8.1 – Parallel Processing DNA Sequence Comparison and Clustering
- Semblance 0.0.1 – Assess Genome Assembly by Comparison to Finished Clones
- GENOVA 1.00 – Genome Visualization and Analysis software for detailed Comparison of Genome Functions
- ProPhylo 1.02 – Phylogenetic Profile comparison program using Partial Phylogenetic Profile algorithm
- CNViewer 2.1 – Analysis and Comparison of Copy Number Variation (CNV)
- CCT – CGView Comparison Tool
- prof_ss – Profile-profile Comparison algorithm using Primary and Secondary Structure Information
- urms – Structure Comparison Algorithm
- prof_sim – Profile-profile Comparison Algorithm
- COMPASS 3.1 – COmparison of Multiple Protein Sequence Alignments with assessment of Statistical Significance.
- T-Reg Comparator – Comparison of Position Weight Matrices
- MATLIGN 20060524 – Motif Clustering, Comparison and Matching tool
- STAMP 1.1 – Tool-kit for DNA Motif Comparison
- MS_Align 2.0 – Comparison of Minisatellites
- FRASS 1.0 – RNA Structure Comparison
- RNACluster 1.0 – RNA Secondary Structure Comparison and Clustering
- SCOOP 0.02 – Comparison of Families of Proteins
- MUTPROF 0.2 / MUTCOMP 0.1 – Comparison of Mutation Profiles
- GSC 1.2 – NMR Chemical Shift Comparison
- jViz.Rna 2.0 – Visual Comparison of RNA Secondary Structure
- STRuster 3.1 – Comparison and Analysis of Alternative Structural Models
- SMAP 2.0 – Comparison & Similarity Search of Protein Three-dimensional Motif
- CLICK – Comparison of Biomolecular 3D Structures
- SeqVISTA 1.81 – Sequence Feature Visualization & Comparison
- MatAlign V4A – Comparison, Alignment of PSSMs
- CMap 1.01 – View Comparisons of Genetic & Physical Maps
- D2Z 0.1 – Alignment Free Comparison of Regulatory Sequences
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