PrOCoil 2.14.0 – Predicting the Oligomerization of Coiled Coil Proteins

PrOCoil 2.14.0

:: DESCRIPTION

The PrOCoil package allows to predict whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer.

::DEVELOPER

Institute of Bioinformatics, Johannes Kepler University Linz

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/ Linux / MacOsX
  • R
  • BioConductor

:: DOWNLOAD

  PrOCoil

:: MORE INFORMATION

Citation

Mol Cell Proteomics. 2011 May;10(5):M110.004994. doi: 10.1074/mcp.M110.004994. Epub 2011 Feb 10.
Complex networks govern coiled-coil oligomerization–predicting and profiling by means of a machine learning approach.
Mahrenholz CC1, Abfalter IG, Bodenhofer U, Volkmer R, Hochreiter S.

CCBuilder 1.0 – Coiled-coil Protein Assemblies

CCBuilder 1.0

:: DESCRIPTION

CCBuilder is a web-based application that tackles the problem for a defined but large class of protein structure, the α-helical coiled coils.

::DEVELOPER

Woolfson Lab

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Web Browser

:: DOWNLOAD

  NO

:: MORE INFORMATION

Citation

CCBuilder: an interactive web-based tool for building, designing and assessing coiled-coil protein assemblies.
Wood CW, Bruning M, Ibarra AA, Bartlett GJ, Thomson AR, Sessions RB, Brady RL, Woolfson DN.
Bioinformatics. 2014 Jul 26. pii: btu502.