Pysces 0.9.1 – Python Simulator of Cellular Systems

Pysces 0.9.1

:: DESCRIPTION

Pysces is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time course and steady state, and does a complete control analysis.

::DEVELOPER

PySCeS Team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Pysces

:: MORE INFORMATION

Citation:

Brett G. Olivier, Johann M. Rohwer and Jan-Hendrik S. Hofmeyr
Modelling cellular systems with PySCeS
Bioinformatics (2005) 21 (4): 560-561.

MANYCELL 1.0 – Simulator for Cellular Systems

MANYCELL 1.0

:: DESCRIPTION

ManyCell is a multiscale simulator for populations of cells where each cell is described by a full ODE model. It uses COPASI for the molecular level and an agent based simulator for the cell level.

::DEVELOPER

Mendes Research Group

:: REQUIREMENTS

  • Windows / Linux / Mac OsX
  • Java
  • Apache Tomcat
  • COPASI

:: DOWNLOAD

 ManyCell

:: MORE INFORMATION