CASSIS / SMIPS 201511 – Prediction of Secondary Metabolite Gene Clusters in Eukaryotic Genomes

CASSIS / SMIPS 201511

:: DESCRIPTION

CASSIS (cluster assignment by islands of sites) is a tool to predict secondary metabolite (SM) gene clusters around a given anchor (or backbone) gene.

SMIPS (secondary metabolites by InterProScan) is a tool to predict secondary metabolite (SM) anchor genes, also called SM backbone genes, in protein sequences.

::DEVELOPER

CASSIS team

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Windows/Linux
  • Perl

:: DOWNLOAD

 CASSIS / SMIPS

:: MORE INFORMATION

Citation

CASSIS and SMIPS: Promoter-based prediction of secondary metabolite gene clusters in eukaryotic genomes.
Wolf T, Shelest V, Nath N, Shelest E.
Bioinformatics. 2015 Dec 9. pii: btv713.

Cassis 1.0 – Detect Genomic Rearrangement Breakpoints

Cassis 1.0

:: DESCRIPTION

Cassis is a software for precise detection of rearrangement breakpoints in whole (sequenced and assembled) genomes.

::DEVELOPER

Claire Lemaitre

:: SCREENSHOTS

N/A

:: REQUIREMENTS

:: DOWNLOAD

 Cassis

:: MORE INFORMATION

Citation

Baudet, C., Lemaitre, C., Dias, Z., Tannier, E., Tannier, E., Gautier, C., and Sagot, M.-F. (2010).
Cassis : precise detection of genomic rearrangement breakpoints.
Bioinformatics, 26(15), 1897-1898.