bloutminer 0.9.6 – Script for Mining data from BLAST Reports

bloutminer 0.9.6

:: DESCRIPTION

bloutminer is a script for mining data from BLAST reports. Allows you to specify e.g. an E-value cutoff, a length cutoff and a percent identity cutoff, and extract a list of the hits satisfying these cutoffs. I normally use an E-value cutoff of 10 for my BLAST searches, and then extracts hits with bloutminer, allowing me to change the cutoffs at a later stage without redoing the whole BLAST search. Is also able to “pool” sequences into groups, based on their sequence tags. In addition, it can also output the N number of best matches to a query.

::DEVELOPER

Johan Bengtsson

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX/ Windows
  • Perl

:: DOWNLOAD

  bloutminer

:: MORE INFORMATION

blastgrep 1.0.2 – Grep for Pattern Matches but on Query-basis in BLAST reports

blastgrep 1.0.2

:: DESCRIPTION

blastgrep allows you to grep for pattern matches but on query-basis in BLAST reports. So, if you would like to find all queries that has found a sequence which description matches the pattern “photosystem”, you type “blastgrep -i blast_report_file -e ‘photosystem’ -o query” and you get a list of which queries that have such matches.

::DEVELOPER

Johan Bengtsson

:: SCREENSHOTS

N/A

:: REQUIREMENTS

  • Linux / MacOsX/ Windows
  • Perl

:: DOWNLOAD

 blastgrep

:: MORE INFORMATION